Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HHJ44_RS09935 Genome accession   NZ_CP053231
Coordinates   2034077..2034592 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain SCU-306     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2029077..2039592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ44_RS09915 (HHJ44_09910) emrA 2029225..2030397 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HHJ44_RS09920 (HHJ44_09915) emrB 2030414..2031952 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  HHJ44_RS09925 (HHJ44_09920) - 2032210..2032917 (+) 708 WP_001097119.1 RNA ligase family protein -
  HHJ44_RS09930 (HHJ44_09925) - 2032914..2034026 (+) 1113 WP_000638132.1 ATP-binding protein -
  HHJ44_RS09935 (HHJ44_09930) luxS 2034077..2034592 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HHJ44_RS09940 (HHJ44_09935) gshA 2034743..2036299 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HHJ44_RS09945 (HHJ44_09940) yqaA 2036372..2036800 (-) 429 WP_000005714.1 YqaA family protein -
  HHJ44_RS09950 (HHJ44_09945) yqaB 2036797..2037363 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HHJ44_RS09975 (HHJ44_09970) csrA 2038413..2038598 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=390737 HHJ44_RS09935 WP_001130211.1 2034077..2034592(-) (luxS) [Escherichia coli strain SCU-306]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=390737 HHJ44_RS09935 WP_001130211.1 2034077..2034592(-) (luxS) [Escherichia coli strain SCU-306]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCAGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment