Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   F1C79_RS30075 Genome accession   NZ_CP043626
Coordinates   6459102..6459503 (+) Length   133 a.a.
NCBI ID   WP_151189418.1    Uniprot ID   -
Organism   Pseudomonas denitrificans (nom. rej.) strain BG1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6454102..6464503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1C79_RS30050 (F1C79_30065) yacG 6454201..6454404 (-) 204 WP_017516736.1 DNA gyrase inhibitor YacG -
  F1C79_RS30055 (F1C79_30070) coaE 6454401..6455009 (-) 609 WP_081517370.1 dephospho-CoA kinase -
  F1C79_RS30060 (F1C79_30075) - 6455074..6455945 (-) 872 Protein_5982 A24 family peptidase -
  F1C79_RS30065 (F1C79_30080) pilC 6455949..6457166 (-) 1218 WP_151189416.1 type II secretion system F family protein Machinery gene
  F1C79_RS30070 (F1C79_30085) pilB 6457170..6458873 (-) 1704 WP_151189417.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F1C79_RS30075 (F1C79_30090) comP 6459102..6459503 (+) 402 WP_151189418.1 pilin Machinery gene
  F1C79_RS30080 (F1C79_30095) - 6460109..6461461 (+) 1353 WP_167523263.1 sulfatase-like hydrolase/transferase -
  F1C79_RS30090 (F1C79_30105) galE 6461895..6462911 (-) 1017 WP_151189420.1 UDP-glucose 4-epimerase GalE -
  F1C79_RS30095 (F1C79_30110) nadC 6463020..6463868 (-) 849 WP_151189421.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 13820.96 Da        Isoelectric Point: 7.6340

>NTDB_id=385551 F1C79_RS30075 WP_151189418.1 6459102..6459503(+) (comP) [Pseudomonas denitrificans (nom. rej.) strain BG1]
MKAQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRARVTEGLSLASGIKTTVAENMANNPTTTTRCAGANTTVAGHVAT
LTCTDTTGEIDVVMDNTAKAAALKLTPTQVSGGPISWKCTTSTDAKYVPAECR

Nucleotide


Download         Length: 402 bp        

>NTDB_id=385551 F1C79_RS30075 WP_151189418.1 6459102..6459503(+) (comP) [Pseudomonas denitrificans (nom. rej.) strain BG1]
ATGAAAGCTCAAAAAGGCTTCACTCTGATCGAACTGATGATCGTGGTTGCGATCATCGGCATCCTGGCGGCCATCGCTCT
GCCGGCTTACCAAGACTACACCGTTCGTGCCCGTGTTACTGAAGGTCTGAGCCTCGCCAGCGGTATCAAAACCACTGTGG
CCGAGAACATGGCCAACAACCCGACCACCACCACTCGCTGCGCTGGCGCCAACACCACTGTAGCCGGACATGTTGCGACT
CTGACCTGCACCGACACTACTGGTGAAATCGACGTTGTCATGGATAACACTGCTAAAGCTGCTGCTCTGAAGCTGACCCC
GACCCAAGTTTCTGGTGGTCCGATTTCTTGGAAGTGCACCACTTCTACCGATGCGAAATACGTTCCGGCCGAGTGCCGTT
AA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

57.823

100

0.639
  pilA Ralstonia pseudosolanacearum GMI1000

47.5

100

0.571
  pilA2 Legionella pneumophila str. Paris

50.746

100

0.511
  pilA2 Legionella pneumophila strain ERS1305867

50

100

0.504
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.106

100

0.496
  pilA/pilA1 Eikenella corrodens VA1

41.333

100

0.466
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.667

100

0.459
  pilE Neisseria gonorrhoeae MS11

37.179

100

0.436
  pilA Pseudomonas aeruginosa PAK

37.584

100

0.421
  pilA Acinetobacter baumannii strain A118

39.568

100

0.414
  pilA Haemophilus influenzae 86-028NP

39.706

100

0.406
  pilA Haemophilus influenzae Rd KW20

37.5

100

0.383
  pilA/pilAII Pseudomonas stutzeri DSM 10701

36.17

100

0.383
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

34.722

100

0.376
  pilA Vibrio cholerae C6706

34.722

100

0.376
  pilA Vibrio cholerae strain A1552

34.722

100

0.376

Multiple sequence alignment