Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F1C79_RS30065 Genome accession   NZ_CP043626
Coordinates   6455949..6457166 (-) Length   405 a.a.
NCBI ID   WP_151189416.1    Uniprot ID   A0A9X7N5P7
Organism   Pseudomonas denitrificans (nom. rej.) strain BG1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6450949..6462166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1C79_RS30025 (F1C79_30040) - 6451692..6451862 (-) 171 WP_017516731.1 DUF3094 domain-containing protein -
  F1C79_RS30030 (F1C79_30045) - 6451957..6452586 (-) 630 WP_045209488.1 DUF1780 domain-containing protein -
  F1C79_RS30035 (F1C79_30050) - 6452678..6453142 (+) 465 WP_231708957.1 FAD/FMN-containing dehydrogenase -
  F1C79_RS30040 (F1C79_30055) - 6453139..6453828 (+) 690 WP_151189415.1 energy-coupling factor ABC transporter permease -
  F1C79_RS30045 (F1C79_30060) - 6453936..6454151 (+) 216 WP_081517369.1 hypothetical protein -
  F1C79_RS30050 (F1C79_30065) yacG 6454201..6454404 (-) 204 WP_017516736.1 DNA gyrase inhibitor YacG -
  F1C79_RS30055 (F1C79_30070) coaE 6454401..6455009 (-) 609 WP_081517370.1 dephospho-CoA kinase -
  F1C79_RS30060 (F1C79_30075) - 6455074..6455945 (-) 872 Protein_5982 A24 family peptidase -
  F1C79_RS30065 (F1C79_30080) pilC 6455949..6457166 (-) 1218 WP_151189416.1 type II secretion system F family protein Machinery gene
  F1C79_RS30070 (F1C79_30085) pilB 6457170..6458873 (-) 1704 WP_151189417.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F1C79_RS30075 (F1C79_30090) comP 6459102..6459503 (+) 402 WP_151189418.1 pilin Machinery gene
  F1C79_RS30080 (F1C79_30095) - 6460109..6461461 (+) 1353 WP_167523263.1 sulfatase-like hydrolase/transferase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44072.66 Da        Isoelectric Point: 9.7290

>NTDB_id=385549 F1C79_RS30065 WP_151189416.1 6455949..6457166(-) (pilC) [Pseudomonas denitrificans (nom. rej.) strain BG1]
MAEKTLKSSVFTWEGTDRKGGKVKGELSGVNTALIKAQLRKQGINPTKVRKKGVSLLGAGKKIKPMDIALFTRQMATMMG
SGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVAAGNSLANSLRKKPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVIVVAVIVSSILLIKVVPQFQSVFSSFGAELPAFTQMVIALSEVLQAWWFIFLIGLFAIAFALR
EAHRRSEKFRDFVDRSILKLPIMGDILYKSAVARYARTLSTTFAAGVPLVEALDSVAGATGNVVFRTAVNKIKQDVSSGT
QLNFSMRTTGVFPSMAIQMAAIGEESGSLDAMLDKVASYYEEEVDNAVDNLTTLMEPLIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=385549 F1C79_RS30065 WP_151189416.1 6455949..6457166(-) (pilC) [Pseudomonas denitrificans (nom. rej.) strain BG1]
ATGGCGGAAAAAACATTGAAGAGCAGTGTCTTCACCTGGGAAGGCACTGATCGCAAGGGCGGGAAAGTCAAAGGGGAGCT
TTCCGGGGTCAATACCGCGCTGATCAAGGCACAGCTGCGCAAGCAGGGGATCAACCCTACCAAGGTACGCAAGAAGGGAG
TTTCACTACTGGGCGCAGGCAAGAAGATCAAGCCCATGGACATCGCGCTGTTCACCCGACAGATGGCGACCATGATGGGC
TCCGGTGTTCCCCTGTTGCAGTCTTTCGACATCATCGGCGAAGGCTTCGACAACCCGAACATGCGCAAGCTGGTCGACGA
GATCAAACAGGAGGTGGCCGCCGGCAACAGCCTAGCCAACTCTTTGCGTAAGAAGCCGCAGTACTTCGACGACCTCTATT
GCAACCTGGTTGATGCGGGTGAGCAGTCCGGTGCACTGGAAACCCTGCTGGATCGTGTGGCGACCTATAAGGAAAAGACC
GAGTCGCTGAAGGCCAAGATCAAGAAAGCCATGACTTACCCGATCGCGGTAATTGTTGTGGCGGTTATTGTCTCCTCAAT
CCTGTTGATCAAGGTCGTTCCGCAGTTCCAGAGCGTATTTTCAAGCTTCGGCGCGGAGCTCCCAGCATTTACGCAAATGG
TCATTGCCCTCTCGGAGGTCCTTCAGGCTTGGTGGTTCATTTTCCTGATCGGGCTATTCGCCATAGCATTCGCCTTGCGA
GAGGCTCATCGGCGCTCGGAGAAATTCCGGGACTTTGTTGATCGCTCGATCCTAAAGCTCCCGATCATGGGTGACATCCT
CTACAAGTCTGCCGTGGCTCGTTATGCTCGTACGCTATCGACCACATTCGCGGCAGGCGTGCCCTTGGTTGAGGCCTTGG
ACTCGGTAGCCGGTGCCACCGGCAACGTCGTATTCCGTACTGCGGTCAACAAGATCAAGCAAGACGTGTCCTCGGGCACA
CAGCTGAACTTTTCCATGCGTACCACAGGCGTGTTCCCGAGCATGGCCATCCAGATGGCAGCCATCGGCGAAGAGTCCGG
CTCCCTGGATGCAATGCTGGACAAAGTTGCATCCTACTACGAGGAAGAGGTCGACAACGCCGTCGACAACCTGACCACCC
TGATGGAGCCCCTGATCATGGCGGTTCTGGGGGTTCTGGTGGGTGGTTTGATCATCGCAATGTACCTGCCTATCTTCCAA
CTGGGCTCAGTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80.741

100

0.807
  pilC Acinetobacter baumannii D1279779

62.469

98.025

0.612
  pilC Acinetobacter baylyi ADP1

60.837

100

0.61
  pilC Legionella pneumophila strain ERS1305867

54.545

97.778

0.533
  pilG Neisseria meningitidis 44/76-A

44.888

99.012

0.444
  pilG Neisseria gonorrhoeae MS11

44.638

99.012

0.442
  pilC Vibrio cholerae strain A1552

43.21

100

0.432
  pilC Vibrio campbellii strain DS40M4

40.404

97.778

0.395
  pilC Thermus thermophilus HB27

38.653

99.012

0.383

Multiple sequence alignment