Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   FY406_RS04075 Genome accession   NZ_CP043405
Coordinates   830780..831277 (+) Length   165 a.a.
NCBI ID   WP_003086868.1    Uniprot ID   A0A7X9QHT7
Organism   Streptococcus ratti strain ATCC 31377     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 825780..836277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS04075 (FY406_04075) comX/sigX 830780..831277 (+) 498 WP_003086868.1 sigma-70 family RNA polymerase sigma factor Regulator
  FY406_RS04080 (FY406_04080) ispE 831585..832433 (+) 849 WP_003091323.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
  FY406_RS04085 (FY406_04085) - 832578..833018 (+) 441 WP_003086865.1 zinc-dependent MarR family transcriptional regulator -
  FY406_RS04090 (FY406_04090) - 833021..833722 (+) 702 WP_003086864.1 metal ABC transporter ATP-binding protein -
  FY406_RS04095 (FY406_04095) - 833722..834534 (+) 813 WP_003086863.1 metal ABC transporter permease -
  FY406_RS04100 (FY406_04100) tyrS 834615..835871 (-) 1257 WP_003086861.1 tyrosine--tRNA ligase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20197.14 Da        Isoelectric Point: 7.2749

>NTDB_id=383563 FY406_RS04075 WP_003086868.1 830780..831277(+) (comX/sigX) [Streptococcus ratti strain ATCC 31377]
MEEDFEIAFNKVKPIIFKLQRYYFIKLWTREDWQQEGMLVLHQLLKEHPELSKDDAKLYVYFKTRFSNYIKDVLRQQESQ
KRRFNKMPYDEISEVAHCVSNAGMQLDEYVLFYDRLTAYKKELDENQKEQFERLVAGERFLGRQKMLKELKKKLSDFDDT
SLREQ

Nucleotide


Download         Length: 498 bp        

>NTDB_id=383563 FY406_RS04075 WP_003086868.1 830780..831277(+) (comX/sigX) [Streptococcus ratti strain ATCC 31377]
ATGGAAGAAGATTTTGAAATTGCTTTTAATAAAGTTAAGCCGATTATATTTAAGCTGCAGCGCTACTACTTTATTAAACT
GTGGACTCGAGAAGACTGGCAGCAAGAGGGAATGTTGGTTTTACATCAATTGTTAAAAGAACATCCTGAACTAAGTAAGG
ATGATGCAAAGCTTTATGTTTATTTTAAGACGAGATTCTCGAACTATATTAAAGATGTTTTGCGTCAGCAGGAAAGTCAA
AAACGTCGTTTTAACAAAATGCCCTATGATGAAATCAGTGAAGTGGCTCACTGTGTTTCAAATGCAGGCATGCAGCTGGA
TGAATATGTCTTGTTTTATGACCGTTTAACTGCTTACAAGAAGGAACTGGATGAGAATCAAAAAGAGCAGTTTGAGCGCC
TGGTGGCTGGGGAACGATTTTTAGGAAGACAAAAAATGCTTAAGGAACTCAAGAAAAAGTTGAGTGATTTTGATGACACC
AGTTTAAGGGAACAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9QHT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus mutans UA159

76.433

95.152

0.727
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

48.387

93.939

0.455
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

48.667

90.909

0.442
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

48.667

90.909

0.442
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

48.667

90.909

0.442
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

48.667

90.909

0.442
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

48

90.909

0.436
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

48

90.909

0.436
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

45.455

93.333

0.424
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

45.455

93.333

0.424
  comX Streptococcus thermophilus LMD-9

42.5

96.97

0.412
  comX Streptococcus thermophilus LMG 18311

42.5

96.97

0.412
  comX/sigX Streptococcus salivarius strain HSISS4

43.312

95.152

0.412
  comX Streptococcus salivarius SK126

43.312

95.152

0.412
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

42.857

93.333

0.4
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

41.558

93.333

0.388
  comX/sigX Streptococcus suis isolate S10

41.558

93.333

0.388
  comX/sigX Streptococcus suis D9

41.558

93.333

0.388
  comX/sigX Streptococcus suis P1/7

41.558

93.333

0.388
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

40.909

93.333

0.382
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

40.26

93.333

0.376
  comX Streptococcus sobrinus strain NIDR 6715-7

40

93.939

0.376
  comX/comX1 Streptococcus pneumoniae Rx1

40.94

90.303

0.37
  comX/comX2 Streptococcus pneumoniae D39

40.94

90.303

0.37
  comX/comX1 Streptococcus pneumoniae TIGR4

40.94

90.303

0.37
  comX/comX2 Streptococcus pneumoniae R6

40.94

90.303

0.37
  comX/comX1 Streptococcus pneumoniae R6

40.94

90.303

0.37
  comX/comX2 Streptococcus pneumoniae TIGR4

40.94

90.303

0.37
  comX/comX1 Streptococcus pneumoniae D39

40.94

90.303

0.37
  comX/comX2 Streptococcus pneumoniae Rx1

40.94

90.303

0.37

Multiple sequence alignment