Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   GmarT_RS29315 Genome accession   NZ_CP042910
Coordinates   194775..194888 (-) Length   37 a.a.
NCBI ID   WP_155367955.1    Uniprot ID   -
Organism   Gimesia maris strain DSM 8797     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 189775..199888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GmarT_RS00765 (GmarT_01580) - 190747..193164 (-) 2418 WP_002648707.1 c-type cytochrome -
  GmarT_RS00770 (GmarT_01590) - 193378..193815 (-) 438 WP_002648706.1 carboxypeptidase-like regulatory domain-containing protein -
  GmarT_RS00775 (GmarT_01600) - 193926..194762 (-) 837 Protein_158 DUF1559 domain-containing protein -
  GmarT_RS29315 (GmarT_01610) pilV 194775..194888 (-) 114 WP_155367955.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  GmarT_RS00780 (GmarT_01620) - 195231..196742 (-) 1512 WP_002648703.1 SGNH/GDSL hydrolase family protein -
  GmarT_RS00785 (GmarT_01630) - 196944..197360 (-) 417 WP_002648702.1 carboxypeptidase-like regulatory domain-containing protein -
  GmarT_RS00790 (GmarT_01640) - 197388..198326 (-) 939 WP_002648701.1 DUF1559 domain-containing protein -

Sequence

Protein


Download         Length: 37 a.a.        Molecular weight: 3918.86 Da        Isoelectric Point: 9.8490

>NTDB_id=379380 GmarT_RS29315 WP_155367955.1 194775..194888(-) (pilV) [Gimesia maris strain DSM 8797]
MTSAPSLSTRRGFTLIELLVVIAIIAILIALLLPAVQ

Nucleotide


Download         Length: 114 bp        

>NTDB_id=379380 GmarT_RS29315 WP_155367955.1 194775..194888(-) (pilV) [Gimesia maris strain DSM 8797]
ATGACAAGCGCACCATCATTATCCACCAGAAGAGGCTTTACGCTGATTGAATTGCTGGTCGTGATTGCGATTATCGCGAT
CCTGATTGCATTACTGTTACCCGCCGTTCAGTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAII Pseudomonas stutzeri DSM 10701

60.606

89.189

0.541
  pilA/pilA1 Eikenella corrodens VA1

67.857

75.676

0.514
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

70.37

72.973

0.514
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

63.333

81.081

0.514
  pilA/pilA1 Synechocystis sp. PCC 6803

61.29

83.784

0.514
  pilA Vibrio campbellii strain DS40M4

64.286

75.676

0.486
  pilA/pilAI Pseudomonas stutzeri DSM 10701

64.286

75.676

0.486
  pilE Neisseria gonorrhoeae MS11

60

81.081

0.486
  pilE Neisseria gonorrhoeae strain FA1090

60

81.081

0.486
  comF Acinetobacter baylyi ADP1

54.839

83.784

0.459
  fimT Acinetobacter baylyi ADP1

70.833

64.865

0.459
  pilA Ralstonia pseudosolanacearum GMI1000

57.143

75.676

0.432
  pilA Vibrio parahaemolyticus RIMD 2210633

57.143

75.676

0.432
  pilY2 Acinetobacter baumannii D1279779

51.613

83.784

0.432
  pilA Acinetobacter baumannii strain A118

51.613

83.784

0.432
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

76.19

56.757

0.432
  xcpW Acinetobacter baumannii D1279779

53.333

81.081

0.432
  pilA Vibrio cholerae C6706

50

75.676

0.378
  comGD Latilactobacillus sakei subsp. sakei 23K

56

67.568

0.378
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

50

75.676

0.378
  pilA Vibrio cholerae strain A1552

50

75.676

0.378

Multiple sequence alignment