Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   FNT16_RS17150 Genome accession   NZ_CP041660
Coordinates   4018436..4019470 (-) Length   344 a.a.
NCBI ID   WP_143872735.1    Uniprot ID   -
Organism   Catenovulum sediminis strain WS1-A     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4013436..4024470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNT16_RS17125 - 4013584..4014000 (+) 417 WP_246072267.1 response regulator -
  FNT16_RS17130 yfbV 4014011..4014457 (-) 447 WP_143872732.1 terminus macrodomain insulation protein YfbV -
  FNT16_RS17135 rmuC 4014511..4015791 (-) 1281 WP_246072269.1 DNA recombination protein RmuC -
  FNT16_RS17140 ectB 4015941..4017191 (-) 1251 WP_143872733.1 diaminobutyrate--2-oxoglutarate transaminase -
  FNT16_RS17145 pilU 4017311..4018423 (-) 1113 WP_143872734.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  FNT16_RS17150 pilT 4018436..4019470 (-) 1035 WP_143872735.1 type IV pilus twitching motility protein PilT Machinery gene
  FNT16_RS17155 - 4019586..4020293 (+) 708 WP_143872736.1 YggS family pyridoxal phosphate-dependent enzyme -
  FNT16_RS17160 proC 4020293..4021117 (+) 825 WP_143872737.1 pyrroline-5-carboxylate reductase -
  FNT16_RS17165 - 4021134..4021672 (+) 539 Protein_3373 YggT family protein -
  FNT16_RS17170 - 4021822..4022298 (+) 477 WP_185976631.1 DUF4426 domain-containing protein -
  FNT16_RS17175 dinB 4022307..4023374 (-) 1068 WP_143872739.1 DNA polymerase IV -
  FNT16_RS17180 nqrM 4023504..4023716 (-) 213 WP_143872740.1 (Na+)-NQR maturation NqrM -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38312.96 Da        Isoelectric Point: 7.1224

>NTDB_id=372837 FNT16_RS17150 WP_143872735.1 4018436..4019470(-) (pilT) [Catenovulum sediminis strain WS1-A]
MDITELLSFSVNHKASDLHLSAGVPPMIRVDGDVRKINIPALDHKQVHQLIYDIMNDKQRKEYEENWEADFSFEVPNLAR
FRVNAFVQNRGASAVFRTIPSEVLSLEDINAPEIFKELADKPRGLVLVTGPTGSGKSTTLAAMIDYINQNKHHHILTIED
PIEFVHKNKQSLINQREVHRDTKSFNNALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAPKTIDRI
VDVFPAAEKPMVRSMLSESLQAVISQTLLKRSGGGRVAAHEIMVGTPAIRNLIREDKVAQMYSAIQTGMGFGMQTMDQCL
GDLVSRGIITRQAALAKAVNKQQF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=372837 FNT16_RS17150 WP_143872735.1 4018436..4019470(-) (pilT) [Catenovulum sediminis strain WS1-A]
ATGGATATTACTGAGTTATTGTCTTTTAGTGTTAATCATAAAGCTTCCGATTTACACCTTTCCGCCGGGGTTCCCCCGAT
GATCCGTGTTGATGGAGATGTCCGAAAAATAAATATTCCAGCTTTAGATCATAAACAAGTGCATCAGCTGATTTATGACA
TCATGAATGACAAACAACGAAAAGAATATGAAGAAAACTGGGAAGCAGATTTTTCTTTTGAAGTTCCAAATCTAGCACGA
TTTAGGGTTAATGCCTTTGTGCAGAACCGTGGTGCATCTGCTGTTTTCCGTACTATTCCCAGTGAAGTACTGTCGTTGGA
AGATATTAACGCACCTGAGATTTTTAAAGAATTGGCTGACAAACCAAGGGGGCTTGTATTGGTAACAGGGCCAACCGGTT
CAGGTAAAAGTACGACCTTGGCGGCAATGATAGATTATATTAATCAAAATAAGCATCATCATATTCTAACTATTGAAGAT
CCAATTGAATTTGTTCATAAAAACAAGCAAAGCCTAATTAATCAAAGGGAAGTGCATCGCGATACTAAATCTTTTAACAA
TGCACTGCGTTCGGCATTACGGGAAGACCCGGATGTCATTCTTGTTGGCGAAATGCGTGATTTGGAAACCATACGTTTAG
CAATGACAGCAGCCGAAACCGGTCACCTAGTGTTTGGTACCTTGCACACCACCTCAGCACCGAAAACCATAGATCGTATT
GTTGATGTATTTCCGGCTGCCGAAAAACCAATGGTGCGCTCTATGTTGTCTGAATCGCTGCAGGCTGTTATTTCGCAAAC
CTTATTAAAACGCTCTGGTGGTGGACGTGTCGCGGCGCACGAAATTATGGTTGGCACACCGGCAATTCGAAATCTCATTC
GAGAAGACAAGGTCGCACAGATGTATTCTGCCATTCAAACTGGTATGGGCTTTGGGATGCAGACGATGGATCAGTGTTTA
GGCGATTTAGTGAGCCGAGGTATCATTACCAGACAAGCCGCATTGGCCAAAGCCGTTAATAAGCAGCAGTTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas stutzeri DSM 10701

77.326

100

0.773
  pilT Pseudomonas aeruginosa PAK

77.326

100

0.773
  pilT Acinetobacter nosocomialis M2

77.035

100

0.77
  pilT Acinetobacter baumannii D1279779

76.744

100

0.767
  pilT Acinetobacter baumannii strain A118

76.744

100

0.767
  pilT Acinetobacter baylyi ADP1

76.163

100

0.762
  pilT Legionella pneumophila strain Lp02

74.128

100

0.741
  pilT Legionella pneumophila strain ERS1305867

74.128

100

0.741
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

72.107

97.965

0.706
  pilT Vibrio cholerae strain A1552

72.107

97.965

0.706
  pilT Neisseria gonorrhoeae MS11

67.638

99.709

0.674
  pilT Neisseria meningitidis 8013

67.638

99.709

0.674
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.043

100

0.532
  pilU Acinetobacter baylyi ADP1

42.059

98.837

0.416
  pilU Vibrio cholerae strain A1552

42.183

98.547

0.416
  pilU Pseudomonas stutzeri DSM 10701

41.888

98.547

0.413

Multiple sequence alignment