Detailed information NTG0372836

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: FNT16_RS17145
• Genome accession: NZ_CP041660
• Coordinates: 4017311..4018423 (-)
• Length: 370 a.a.
• NCBI ID: WP_143872734.1
• Uniprot ID: -
• Organism: Catenovulum sediminis strain WS1-A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4012311..4023423

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNT16_RS17125	-	4013584..4014000 (+)	417	WP_246072267.1	response regulator	-
FNT16_RS17130	yfbV	4014011..4014457 (-)	447	WP_143872732.1	terminus macrodomain insulation protein YfbV	-
FNT16_RS17135	rmuC	4014511..4015791 (-)	1281	WP_246072269.1	DNA recombination protein RmuC	-
FNT16_RS17140	ectB	4015941..4017191 (-)	1251	WP_143872733.1	diaminobutyrate--2-oxoglutarate transaminase	-
FNT16_RS17145	pilU	4017311..4018423 (-)	1113	WP_143872734.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
FNT16_RS17150	pilT	4018436..4019470 (-)	1035	WP_143872735.1	type IV pilus twitching motility protein PilT	Machinery gene
FNT16_RS17155	-	4019586..4020293 (+)	708	WP_143872736.1	YggS family pyridoxal phosphate-dependent enzyme	-
FNT16_RS17160	proC	4020293..4021117 (+)	825	WP_143872737.1	pyrroline-5-carboxylate reductase	-
FNT16_RS17165	-	4021134..4021672 (+)	539	Protein_3373	YggT family protein	-
FNT16_RS17170	-	4021822..4022298 (+)	477	WP_185976631.1	DUF4426 domain-containing protein	-
FNT16_RS17175	dinB	4022307..4023374 (-)	1068	WP_143872739.1	DNA polymerase IV	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 40800.80 Da
• Isoelectric Point: 5.4533

>NTDB_id=372836 FNT16_RS17145 WP_143872734.1 4017311..4018423(-) (pilU) [Catenovulum sediminis strain WS1-A]
MLILHYLESMSQKGASDLFLTVGRPACAKINGEMTALDNDVLDQSRCESMVLDTMTAAQKEEFLQTKECNYAIAVEGIGR
FRCNAFVQRERTGMVIRKINTEIPDADQLGLPNVLKEAIMSKRGLFLYVGATGTGKSTALAALMGYRNRNSRGHILTIED
PIEFVHQHEKSIVTQREVGVDTESFDAALKSSLRQAPDVIMIGEIRSAEIMEYALSFAETGHLCVATLHANNANQAIDRI
LHLVPKDMKDKLLFDLSLNLKAIVAQQLVPTRDGQGRVAAIEILLNSPLVSDLIARNELGGLKEVMEKSKELGMQTFDSA
LFDLYEKGIINFADALHHADSPNDLRLKIKLRSNQQNSSGSLDGVTIDLD

Nucleotide

• Length: 1113 bp

>NTDB_id=372836 FNT16_RS17145 WP_143872734.1 4017311..4018423(-) (pilU) [Catenovulum sediminis strain WS1-A]
ATGTTAATTCTTCATTATTTAGAAAGTATGTCGCAAAAAGGCGCATCCGATTTATTTTTAACGGTTGGAAGACCAGCTTG
TGCCAAAATAAACGGAGAAATGACCGCATTAGATAATGACGTGTTAGATCAATCGCGCTGTGAATCTATGGTTTTAGATA
CGATGACGGCGGCGCAAAAAGAAGAATTTTTGCAAACCAAAGAATGTAATTACGCTATTGCAGTTGAAGGTATCGGGCGG
TTTCGGTGTAATGCTTTTGTTCAACGAGAGCGCACCGGAATGGTGATTCGTAAAATCAATACTGAAATACCGGATGCAGA
TCAACTTGGTTTACCTAATGTACTAAAAGAAGCGATTATGTCTAAACGTGGTTTGTTTCTGTATGTGGGGGCGACAGGTA
CAGGTAAATCGACTGCATTAGCCGCTTTGATGGGATATCGAAATCGAAACAGCCGAGGGCATATTTTAACAATAGAAGAT
CCGATCGAGTTTGTTCATCAGCACGAAAAGTCAATCGTTACACAGCGAGAAGTAGGCGTAGATACCGAATCGTTTGATGC
AGCCCTGAAAAGTTCGCTGCGACAGGCTCCAGATGTCATTATGATTGGTGAAATTCGATCGGCTGAAATTATGGAATATG
CCTTATCTTTTGCTGAAACAGGGCATTTGTGTGTGGCTACATTGCACGCGAACAATGCAAACCAGGCAATAGATCGCATT
TTACATCTGGTTCCAAAAGATATGAAGGACAAACTATTGTTCGATCTTTCGCTGAACCTTAAAGCAATCGTCGCGCAGCA
ATTAGTGCCAACACGAGATGGTCAGGGGCGAGTCGCGGCAATCGAAATACTGCTCAATTCACCCTTGGTCTCAGATTTAA
TCGCCCGCAACGAGTTGGGTGGATTAAAAGAAGTGATGGAAAAATCCAAAGAGCTGGGGATGCAAACATTTGATAGTGCT
CTATTTGATCTCTATGAAAAAGGCATTATTAACTTTGCTGATGCACTGCATCACGCGGATTCACCAAACGATTTGCGTTT
GAAAATAAAATTGAGAAGCAACCAACAAAATAGTTCAGGTTCACTAGATGGTGTGACGATAGATTTAGATTAG

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (109-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	58.79	93.784	0.551
pilU	Vibrio cholerae strain A1552	55.89	98.649	0.551
pilU	Acinetobacter baylyi ADP1	57.803	93.514	0.541
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.816	92.703	0.378