Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   ALVIN_RS11570 Genome accession   NC_013851
Coordinates   2647604..2648659 (-) Length   351 a.a.
NCBI ID   WP_012971511.1    Uniprot ID   D3RMV1
Organism   Allochromatium vinosum DSM 180     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2642604..2653659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALVIN_RS16670 (Alvin_2319) - 2643500..2646103 (+) 2604 WP_012971508.1 ATP-binding protein -
  ALVIN_RS11560 (Alvin_2320) - 2646205..2647080 (-) 876 WP_012971509.1 TauD/TfdA family dioxygenase -
  ALVIN_RS11565 (Alvin_2321) - 2647085..2647483 (-) 399 WP_012971510.1 VanZ family protein -
  ALVIN_RS11570 (Alvin_2322) pilU 2647604..2648659 (-) 1056 WP_012971511.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ALVIN_RS11575 (Alvin_2323) pilU 2648699..2649946 (-) 1248 WP_012971512.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ALVIN_RS11580 (Alvin_2324) comM 2650068..2651594 (-) 1527 WP_012971513.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ALVIN_RS11585 (Alvin_2325) ubiK 2651613..2651879 (-) 267 WP_012971514.1 ubiquinone biosynthesis accessory factor UbiK -
  ALVIN_RS11590 (Alvin_2326) - 2652332..2653072 (+) 741 WP_012971515.1 TorF family putative porin -
  ALVIN_RS11595 (Alvin_2327) - 2653146..2653484 (+) 339 WP_012971516.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38641.55 Da        Isoelectric Point: 6.2850

>NTDB_id=36271 ALVIN_RS11570 WP_012971511.1 2647604..2648659(-) (pilU) [Allochromatium vinosum DSM 180]
MDIKPYLELMVKHKASDLFFAAGTQVKIKIEGVIRSVGETVLTAAACRAAVEGIMTPEQIEELERERELDFAIALEGKAR
FRVNAYFQRGQPAMVLRYIRANVPTLDELNVPSVLSQLIMHKRGIILMVGATGSGKSTTLAAMIDHRNRNSTGHIVTIED
PIEFTHKHQQCIISQREIGIDTKSYANALKSVLREAPDVVLIGEIRNRETMEAAIELAGTGHLAISTLHANNAYQAMERI
VNMFPQEMHKTLFMDLSAYMRAILSQRLVRTKDGARCAAIEILVNTPHIADLIRDGRVDAINEAMQESGAGGMCTFDDAL
LALYNAGTITMEEALANADSAANLEARIHFG

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=36271 ALVIN_RS11570 WP_012971511.1 2647604..2648659(-) (pilU) [Allochromatium vinosum DSM 180]
ATGGACATCAAGCCCTATCTCGAACTCATGGTCAAGCACAAGGCTTCGGACTTGTTCTTTGCCGCCGGCACCCAGGTCAA
GATCAAGATCGAGGGCGTCATCCGCTCGGTCGGCGAGACGGTGCTGACGGCGGCGGCCTGTCGGGCGGCGGTCGAAGGCA
TCATGACCCCCGAGCAGATCGAGGAGCTGGAGCGCGAGCGCGAACTGGATTTCGCCATCGCGCTGGAGGGCAAGGCGCGT
TTTCGCGTCAACGCCTATTTCCAGCGCGGGCAGCCGGCGATGGTGCTGCGTTACATCCGTGCCAATGTGCCGACGCTCGA
CGAGCTGAATGTGCCGTCGGTCCTCTCGCAGCTCATCATGCACAAGCGCGGGATCATCCTCATGGTCGGGGCCACCGGCT
CGGGCAAGTCGACCACGCTCGCAGCCATGATCGACCACCGCAATCGCAACTCCACCGGACACATCGTCACCATCGAGGAT
CCGATCGAGTTCACCCACAAACACCAGCAGTGCATCATCAGCCAGCGTGAGATCGGCATCGACACCAAGAGCTATGCCAA
CGCGCTCAAGAGCGTGCTGCGCGAGGCGCCCGACGTGGTGCTGATCGGCGAGATCCGCAACCGCGAGACCATGGAGGCAG
CGATCGAACTGGCCGGGACCGGGCATCTGGCGATCTCGACCCTGCATGCCAACAATGCGTATCAAGCGATGGAGCGCATC
GTCAACATGTTCCCGCAGGAGATGCACAAGACGCTGTTCATGGACCTGTCGGCCTACATGCGCGCCATCCTGTCGCAGCG
TCTGGTGCGTACCAAGGACGGCGCGCGCTGCGCGGCGATCGAGATCCTGGTCAACACGCCGCACATCGCCGATCTGATCC
GCGACGGACGGGTCGACGCCATCAACGAAGCGATGCAGGAGAGCGGCGCAGGGGGGATGTGTACCTTCGACGATGCGCTA
CTGGCGCTCTACAACGCCGGTACCATCACGATGGAGGAGGCGCTGGCCAATGCCGACTCGGCGGCCAATCTGGAGGCCAG
GATCCATTTCGGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3RMV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

51.136

100

0.513
  pilU Acinetobacter baylyi ADP1

51.143

99.715

0.51
  pilU Vibrio cholerae strain A1552

47.536

98.291

0.467
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.478

96.581

0.41
  pilT Neisseria meningitidis 8013

40.974

99.43

0.407
  pilT Neisseria gonorrhoeae MS11

40.517

99.145

0.402
  pilT Pseudomonas aeruginosa PAK

39.826

98.006

0.39
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

40.541

94.872

0.385
  pilT Vibrio cholerae strain A1552

40.541

94.872

0.385
  pilT Pseudomonas stutzeri DSM 10701

38.663

98.006

0.379
  pilT Acinetobacter baumannii strain A118

39.521

95.157

0.376
  pilT Acinetobacter nosocomialis M2

39.521

95.157

0.376
  pilT Acinetobacter baumannii D1279779

39.521

95.157

0.376
  pilT Acinetobacter baylyi ADP1

38.372

98.006

0.376
  pilT Legionella pneumophila strain Lp02

38.922

95.157

0.37
  pilT Legionella pneumophila strain ERS1305867

38.922

95.157

0.37

Multiple sequence alignment