Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ALVIN_RS11575 | Genome accession | NC_013851 |
| Coordinates | 2648699..2649946 (-) | Length | 415 a.a. |
| NCBI ID | WP_012971512.1 | Uniprot ID | D3RMV2 |
| Organism | Allochromatium vinosum DSM 180 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2643699..2654946
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ALVIN_RS11560 (Alvin_2320) | - | 2646205..2647080 (-) | 876 | WP_012971509.1 | TauD/TfdA family dioxygenase | - |
| ALVIN_RS11565 (Alvin_2321) | - | 2647085..2647483 (-) | 399 | WP_012971510.1 | VanZ family protein | - |
| ALVIN_RS11570 (Alvin_2322) | pilU | 2647604..2648659 (-) | 1056 | WP_012971511.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ALVIN_RS11575 (Alvin_2323) | pilU | 2648699..2649946 (-) | 1248 | WP_012971512.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ALVIN_RS11580 (Alvin_2324) | comM | 2650068..2651594 (-) | 1527 | WP_012971513.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| ALVIN_RS11585 (Alvin_2325) | ubiK | 2651613..2651879 (-) | 267 | WP_012971514.1 | ubiquinone biosynthesis accessory factor UbiK | - |
| ALVIN_RS11590 (Alvin_2326) | - | 2652332..2653072 (+) | 741 | WP_012971515.1 | TorF family putative porin | - |
| ALVIN_RS11595 (Alvin_2327) | - | 2653146..2653484 (+) | 339 | WP_012971516.1 | P-II family nitrogen regulator | - |
| ALVIN_RS11600 (Alvin_2328) | - | 2653509..2654858 (+) | 1350 | WP_012971517.1 | ammonium transporter | - |
Sequence
Protein
Download Length: 415 a.a. Molecular weight: 45342.82 Da Isoelectric Point: 5.9711
>NTDB_id=36272 ALVIN_RS11575 WP_012971512.1 2648699..2649946(-) (pilU) [Allochromatium vinosum DSM 180]
MDRQQAANFMLDCLRKMTQKNGSDLFISAGFPPACKIHGRMTPMSTQALSGEQTNILVRSIMNDRQVRDFDAHKECNFAI
SPKGIGRFRVNAFVQQGLSGAVLRTINAGIPTLDELKLPPVLKEVVMNKRGLVLMVGGTGSGKSTSLAAMLGHRNANSYG
HIITIEDPVEYVHPHVNCLITQREVGVDTESWEAALVNTLRQAPDVILIGEIRTRETMEHAINFAETGHLCLSTLHANSA
NQALDRIINLFPEERRGQLLMDLSLNLNAIISQRLLPCTDGGRVAAVEIMLNSPLIQDLIFKGDVGGIKAVMKKSRELGM
QTFDMALFDLYEAGKISYEDALRNADSMNGLRLAIKLEGHGAREKDHFSGTGALSIMSDEGDEDGGPDSSLFGDASPVST
IEDPPFDPARFKSDR
MDRQQAANFMLDCLRKMTQKNGSDLFISAGFPPACKIHGRMTPMSTQALSGEQTNILVRSIMNDRQVRDFDAHKECNFAI
SPKGIGRFRVNAFVQQGLSGAVLRTINAGIPTLDELKLPPVLKEVVMNKRGLVLMVGGTGSGKSTSLAAMLGHRNANSYG
HIITIEDPVEYVHPHVNCLITQREVGVDTESWEAALVNTLRQAPDVILIGEIRTRETMEHAINFAETGHLCLSTLHANSA
NQALDRIINLFPEERRGQLLMDLSLNLNAIISQRLLPCTDGGRVAAVEIMLNSPLIQDLIFKGDVGGIKAVMKKSRELGM
QTFDMALFDLYEAGKISYEDALRNADSMNGLRLAIKLEGHGAREKDHFSGTGALSIMSDEGDEDGGPDSSLFGDASPVST
IEDPPFDPARFKSDR
Nucleotide
Download Length: 1248 bp
>NTDB_id=36272 ALVIN_RS11575 WP_012971512.1 2648699..2649946(-) (pilU) [Allochromatium vinosum DSM 180]
ATGGACCGTCAACAAGCCGCGAATTTCATGCTCGACTGTCTGCGCAAGATGACGCAGAAGAATGGATCGGATCTCTTCAT
CTCCGCCGGATTCCCGCCGGCCTGCAAGATCCATGGACGCATGACGCCGATGAGCACTCAGGCGCTGTCCGGTGAGCAGA
CCAACATCCTGGTACGCTCGATCATGAACGACCGCCAGGTGCGCGACTTCGACGCGCACAAGGAATGCAACTTTGCCATC
AGTCCCAAGGGTATCGGGCGTTTTCGCGTCAATGCCTTCGTGCAGCAGGGACTGTCGGGCGCGGTGCTGCGCACCATCAA
CGCCGGTATCCCGACTCTCGACGAGCTGAAGCTGCCGCCGGTGCTCAAGGAGGTGGTGATGAACAAGCGCGGCCTGGTGC
TCATGGTCGGCGGCACCGGCTCGGGCAAGTCGACCTCGCTCGCCGCCATGCTCGGACACCGCAACGCCAACAGCTACGGC
CACATCATCACCATCGAGGATCCGGTCGAATACGTGCACCCGCACGTCAACTGTCTGATCACGCAGCGCGAGGTCGGCGT
CGATACCGAGAGCTGGGAGGCCGCGCTCGTCAATACCCTGCGTCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGCA
CCCGCGAGACCATGGAGCATGCGATCAACTTCGCCGAGACCGGCCATCTGTGTCTCTCGACCCTGCACGCCAACAGCGCC
AACCAGGCGCTCGACCGCATCATCAACCTCTTCCCCGAGGAGCGGCGTGGTCAACTGCTGATGGATCTCTCGCTCAATCT
CAATGCCATCATCTCGCAGCGTCTGCTGCCCTGCACCGATGGTGGGCGGGTCGCGGCCGTCGAGATCATGCTCAACTCGC
CGCTGATCCAGGATCTGATCTTCAAGGGCGACGTCGGCGGCATCAAGGCGGTCATGAAGAAGTCGCGCGAACTCGGGATG
CAGACCTTCGACATGGCGCTGTTCGATCTCTACGAAGCGGGCAAGATCAGCTACGAGGACGCCCTGCGCAATGCCGACTC
CATGAACGGTCTGCGGTTGGCCATCAAGCTCGAGGGGCATGGGGCGCGCGAGAAGGATCACTTCAGCGGCACAGGTGCGC
TGTCGATCATGAGCGACGAGGGCGATGAGGACGGCGGACCGGATTCGAGCCTCTTCGGCGACGCATCGCCCGTCTCGACC
ATCGAGGATCCGCCCTTCGACCCGGCACGTTTCAAGTCGGATCGATAA
ATGGACCGTCAACAAGCCGCGAATTTCATGCTCGACTGTCTGCGCAAGATGACGCAGAAGAATGGATCGGATCTCTTCAT
CTCCGCCGGATTCCCGCCGGCCTGCAAGATCCATGGACGCATGACGCCGATGAGCACTCAGGCGCTGTCCGGTGAGCAGA
CCAACATCCTGGTACGCTCGATCATGAACGACCGCCAGGTGCGCGACTTCGACGCGCACAAGGAATGCAACTTTGCCATC
AGTCCCAAGGGTATCGGGCGTTTTCGCGTCAATGCCTTCGTGCAGCAGGGACTGTCGGGCGCGGTGCTGCGCACCATCAA
CGCCGGTATCCCGACTCTCGACGAGCTGAAGCTGCCGCCGGTGCTCAAGGAGGTGGTGATGAACAAGCGCGGCCTGGTGC
TCATGGTCGGCGGCACCGGCTCGGGCAAGTCGACCTCGCTCGCCGCCATGCTCGGACACCGCAACGCCAACAGCTACGGC
CACATCATCACCATCGAGGATCCGGTCGAATACGTGCACCCGCACGTCAACTGTCTGATCACGCAGCGCGAGGTCGGCGT
CGATACCGAGAGCTGGGAGGCCGCGCTCGTCAATACCCTGCGTCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGCA
CCCGCGAGACCATGGAGCATGCGATCAACTTCGCCGAGACCGGCCATCTGTGTCTCTCGACCCTGCACGCCAACAGCGCC
AACCAGGCGCTCGACCGCATCATCAACCTCTTCCCCGAGGAGCGGCGTGGTCAACTGCTGATGGATCTCTCGCTCAATCT
CAATGCCATCATCTCGCAGCGTCTGCTGCCCTGCACCGATGGTGGGCGGGTCGCGGCCGTCGAGATCATGCTCAACTCGC
CGCTGATCCAGGATCTGATCTTCAAGGGCGACGTCGGCGGCATCAAGGCGGTCATGAAGAAGTCGCGCGAACTCGGGATG
CAGACCTTCGACATGGCGCTGTTCGATCTCTACGAAGCGGGCAAGATCAGCTACGAGGACGCCCTGCGCAATGCCGACTC
CATGAACGGTCTGCGGTTGGCCATCAAGCTCGAGGGGCATGGGGCGCGCGAGAAGGATCACTTCAGCGGCACAGGTGCGC
TGTCGATCATGAGCGACGAGGGCGATGAGGACGGCGGACCGGATTCGAGCCTCTTCGGCGACGCATCGCCCGTCTCGACC
ATCGAGGATCCGCCCTTCGACCCGGCACGTTTCAAGTCGGATCGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
62.899 |
83.133 |
0.523 |
| pilU | Acinetobacter baylyi ADP1 |
56.897 |
83.855 |
0.477 |
| pilU | Vibrio cholerae strain A1552 |
53.371 |
85.783 |
0.458 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
44.38 |
83.614 |
0.371 |