Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ALVIN_RS11580 Genome accession   NC_013851
Coordinates   2650068..2651594 (-) Length   508 a.a.
NCBI ID   WP_012971513.1    Uniprot ID   -
Organism   Allochromatium vinosum DSM 180     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2645068..2656594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALVIN_RS11560 (Alvin_2320) - 2646205..2647080 (-) 876 WP_012971509.1 TauD/TfdA family dioxygenase -
  ALVIN_RS11565 (Alvin_2321) - 2647085..2647483 (-) 399 WP_012971510.1 VanZ family protein -
  ALVIN_RS11570 (Alvin_2322) pilU 2647604..2648659 (-) 1056 WP_012971511.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ALVIN_RS11575 (Alvin_2323) pilU 2648699..2649946 (-) 1248 WP_012971512.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ALVIN_RS11580 (Alvin_2324) comM 2650068..2651594 (-) 1527 WP_012971513.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ALVIN_RS11585 (Alvin_2325) ubiK 2651613..2651879 (-) 267 WP_012971514.1 ubiquinone biosynthesis accessory factor UbiK -
  ALVIN_RS11590 (Alvin_2326) - 2652332..2653072 (+) 741 WP_012971515.1 TorF family putative porin -
  ALVIN_RS11595 (Alvin_2327) - 2653146..2653484 (+) 339 WP_012971516.1 P-II family nitrogen regulator -
  ALVIN_RS11600 (Alvin_2328) - 2653509..2654858 (+) 1350 WP_012971517.1 ammonium transporter -
  ALVIN_RS11605 (Alvin_2329) - 2655109..2655540 (+) 432 WP_012971518.1 BLUF domain-containing protein -
  ALVIN_RS11610 (Alvin_2330) - 2655568..2656521 (+) 954 WP_012971519.1 HD-GYP domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54609.71 Da        Isoelectric Point: 8.1385

>NTDB_id=36273 ALVIN_RS11580 WP_012971513.1 2650068..2651594(-) (comM) [Allochromatium vinosum DSM 180]
MALCILHSRGRLGIEAPPVTVEVQLSGGLPAMSIVGLPEMAVRESKDRVHGALVNNSFQFPNGRVTINLAPADLPKEGGR
FDLPIALGTLGATGQLRTERLEHYECIGELALSGALRPIQGVLPIALAARAAGRALILPQANAAEAAIVEGLEVRPAAHL
REVCAHLDGVEPLPIQRGDDRFQIRPDYPDLVDVRGQEHGKRGLEIAASGGHSILMSGPPGTGKSMLAMRLPGLLPPLSE
SEALEAAAIRSVGGRDPFDPARWLERPFRSPHHTASAAALVGGGTQPRPGEISLAHHGVLFLDELPEFDRRVLEVLREPL
ESGWIDISRAARQVRFPAQFQMVAAMNPCPCGYLGDSTGRCRCSPEQVARYRRRLSGPLLDRIDLHVEVLRLEVGQLTGP
MSRLNETTAQVRARVSAARERQLARAGKANAALTPAEIDRDCALDAAGQRLVEQALTRLALSARAYHRILKVARTIADLA
GAEGIDTTHLSEAIGYRRLDRGFAAPAR

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=36273 ALVIN_RS11580 WP_012971513.1 2650068..2651594(-) (comM) [Allochromatium vinosum DSM 180]
TTGGCCCTCTGCATCCTGCACAGCCGCGGGCGACTCGGAATCGAGGCGCCGCCGGTCACGGTCGAGGTTCAGCTCTCGGG
CGGACTGCCGGCGATGTCCATCGTGGGTCTGCCCGAGATGGCGGTGCGCGAGAGCAAGGACCGGGTGCATGGCGCGCTCG
TCAACAACAGCTTTCAGTTTCCCAACGGGCGGGTCACGATCAATCTTGCGCCGGCCGATCTGCCCAAGGAAGGCGGGCGT
TTCGACTTGCCGATCGCGCTCGGAACCCTGGGGGCCACGGGTCAGCTCAGGACCGAGCGGCTCGAACACTATGAATGCAT
CGGCGAGCTGGCCCTGTCCGGCGCGTTGCGCCCGATCCAGGGCGTGCTGCCGATCGCCCTGGCCGCGCGCGCGGCTGGAC
GAGCGCTGATCCTGCCGCAGGCGAACGCGGCTGAGGCGGCCATCGTCGAGGGGCTGGAGGTGCGCCCGGCCGCGCATCTG
CGCGAGGTGTGCGCACACCTCGATGGCGTCGAACCCCTGCCGATCCAGCGCGGTGACGATCGTTTCCAGATCCGGCCCGA
CTATCCGGATCTGGTCGATGTACGCGGTCAGGAGCACGGCAAACGCGGACTGGAGATCGCCGCCAGCGGCGGGCATTCGA
TCCTGATGTCCGGTCCGCCCGGAACCGGCAAGTCGATGCTGGCCATGCGCCTGCCCGGACTGCTGCCGCCATTGAGCGAG
TCCGAGGCCCTGGAGGCGGCCGCGATCCGCTCGGTCGGCGGGCGTGACCCCTTCGATCCGGCGCGCTGGCTGGAACGTCC
ATTCCGCTCGCCGCATCACACCGCCTCGGCCGCCGCCCTGGTCGGCGGTGGCACCCAGCCGCGACCGGGCGAGATCTCCC
TGGCCCATCATGGCGTGCTCTTTCTCGACGAATTGCCCGAATTCGATCGGCGGGTCTTGGAAGTGCTGCGTGAACCGCTG
GAGTCGGGCTGGATCGACATCTCGCGCGCGGCGCGTCAGGTCCGCTTTCCGGCCCAGTTCCAGATGGTCGCGGCCATGAA
TCCCTGTCCCTGTGGCTATCTGGGCGACAGCACCGGGCGTTGCCGCTGTAGCCCCGAGCAGGTGGCACGGTATCGCCGGC
GCCTGTCCGGTCCGCTGCTCGACCGCATCGACCTGCATGTCGAGGTCCTGCGTCTGGAGGTGGGCCAGCTCACCGGGCCG
ATGTCGCGCCTGAACGAGACCACGGCCCAGGTGCGTGCCCGCGTGAGCGCGGCGCGCGAACGCCAACTCGCGCGCGCCGG
CAAAGCCAACGCGGCCCTGACCCCAGCCGAGATCGATCGCGACTGCGCACTCGACGCCGCCGGTCAACGGCTGGTCGAAC
AGGCTCTGACGCGGCTCGCGCTCTCGGCGCGCGCCTACCATCGTATCCTCAAGGTCGCCCGCACCATCGCCGACCTGGCC
GGTGCCGAGGGCATCGACACGACCCATCTGAGCGAGGCCATCGGCTATCGTCGGCTCGACCGGGGCTTCGCGGCCCCGGC
ACGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.489

98.622

0.547
  comM Vibrio campbellii strain DS40M4

54.691

98.622

0.539
  comM Glaesserella parasuis strain SC1401

53.571

99.213

0.531
  comM Haemophilus influenzae Rd KW20

52.372

99.606

0.522
  comM Legionella pneumophila str. Paris

49.901

99.803

0.498
  comM Legionella pneumophila strain ERS1305867

49.901

99.803

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

49

98.425

0.482

Multiple sequence alignment