Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NX08_RS17005 Genome accession   NZ_CP034657
Coordinates   3669626..3670066 (-) Length   146 a.a.
NCBI ID   WP_039440780.1    Uniprot ID   -
Organism   Xanthomonas vasicola strain NCPPB 902     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3664626..3675066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX08_RS16990 (NX08_016990) pilR 3665397..3666851 (+) 1455 WP_039440776.1 sigma-54 dependent transcriptional regulator Regulator
  NX08_RS16995 (NX08_016995) pilB 3667322..3669055 (-) 1734 WP_039440778.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NX08_RS17000 (NX08_017000) - 3669117..3669551 (-) 435 WP_039440802.1 pilin -
  NX08_RS17005 (NX08_017005) pilE 3669626..3670066 (-) 441 WP_039440780.1 pilin Machinery gene
  NX08_RS17010 (NX08_017010) pilC 3670395..3671651 (+) 1257 WP_039440782.1 type II secretion system F family protein Machinery gene
  NX08_RS17015 (NX08_017015) - 3671658..3672521 (+) 864 WP_039440785.1 A24 family peptidase -
  NX08_RS17020 (NX08_017020) coaE 3672535..3673140 (+) 606 WP_010363800.1 dephospho-CoA kinase -
  NX08_RS17025 (NX08_017025) - 3673212..3674546 (-) 1335 WP_010363803.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14991.09 Da        Isoelectric Point: 9.0090

>NTDB_id=332170 NX08_RS17005 WP_039440780.1 3669626..3670066(-) (pilE) [Xanthomonas vasicola strain NCPPB 902]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYLARSQVSEGLSLASGAKTAVAETYANTGAFPANNAAAGLETAANIKG
KYITSVTVSSGGIITALFNNSNTKLSGKSLVLTPTDNNGSISWGCSNGTTIDQKYLPTSCRTAATP

Nucleotide


Download         Length: 441 bp        

>NTDB_id=332170 NX08_RS17005 WP_039440780.1 3669626..3670066(-) (pilE) [Xanthomonas vasicola strain NCPPB 902]
ATGAAAAAGCAAAACGGTTTTACATTGATCGAACTCATGATCGTGGTTGCGATCATTGCTATCCTGGCTGCCATTGCTCT
GCCGGCTTATCAGGACTACCTTGCGCGCTCGCAGGTCTCTGAAGGTCTGTCGCTGGCATCGGGTGCAAAGACCGCCGTTG
CTGAGACGTATGCCAATACTGGTGCATTCCCGGCCAACAATGCAGCTGCTGGCCTTGAGACTGCGGCAAACATCAAGGGT
AAGTACATCACCTCCGTCACCGTTAGCTCTGGTGGCATCATCACTGCACTGTTTAATAATTCCAATACGAAACTGAGTGG
TAAGAGCCTTGTCCTGACCCCGACGGACAACAACGGGTCGATCAGCTGGGGCTGCAGCAATGGCACCACCATCGATCAAA
AGTATCTGCCTACCTCTTGCCGTACTGCGGCTACGCCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

47.17

100

0.514
  pilE Neisseria gonorrhoeae strain FA1090

46.452

100

0.493
  pilA/pilA1 Eikenella corrodens VA1

45.161

100

0.479
  comP Acinetobacter baylyi ADP1

45.033

100

0.466
  pilA2 Legionella pneumophila str. Paris

48.571

95.89

0.466
  pilA2 Legionella pneumophila strain ERS1305867

47.857

95.89

0.459
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.326

100

0.445
  pilA Acinetobacter baumannii strain A118

42.282

100

0.432
  pilA Ralstonia pseudosolanacearum GMI1000

37.805

100

0.425
  pilA Vibrio cholerae C6706

38.816

100

0.404
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.816

100

0.404
  pilA Vibrio cholerae strain A1552

38.816

100

0.404
  pilA Vibrio campbellii strain DS40M4

37.584

100

0.384
  pilA Pseudomonas aeruginosa PAK

36.842

100

0.384
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.589

96.575

0.363

Multiple sequence alignment