Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NX08_RS17010 Genome accession   NZ_CP034657
Coordinates   3670395..3671651 (+) Length   418 a.a.
NCBI ID   WP_039440782.1    Uniprot ID   -
Organism   Xanthomonas vasicola strain NCPPB 902     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3665395..3676651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX08_RS16990 (NX08_016990) pilR 3665397..3666851 (+) 1455 WP_039440776.1 sigma-54 dependent transcriptional regulator Regulator
  NX08_RS16995 (NX08_016995) pilB 3667322..3669055 (-) 1734 WP_039440778.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NX08_RS17000 (NX08_017000) - 3669117..3669551 (-) 435 WP_039440802.1 pilin -
  NX08_RS17005 (NX08_017005) pilE 3669626..3670066 (-) 441 WP_039440780.1 pilin Machinery gene
  NX08_RS17010 (NX08_017010) pilC 3670395..3671651 (+) 1257 WP_039440782.1 type II secretion system F family protein Machinery gene
  NX08_RS17015 (NX08_017015) - 3671658..3672521 (+) 864 WP_039440785.1 A24 family peptidase -
  NX08_RS17020 (NX08_017020) coaE 3672535..3673140 (+) 606 WP_010363800.1 dephospho-CoA kinase -
  NX08_RS17025 (NX08_017025) - 3673212..3674546 (-) 1335 WP_010363803.1 HAMP domain-containing sensor histidine kinase -
  NX08_RS17030 (NX08_017030) - 3674539..3675216 (-) 678 WP_003490678.1 response regulator transcription factor -
  NX08_RS17035 (NX08_017035) - 3675296..3675718 (-) 423 WP_173399561.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45939.35 Da        Isoelectric Point: 10.3003

>NTDB_id=332171 NX08_RS17010 WP_039440782.1 3670395..3671651(+) (pilC) [Xanthomonas vasicola strain NCPPB 902]
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASIAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=332171 NX08_RS17010 WP_039440782.1 3670395..3671651(+) (pilC) [Xanthomonas vasicola strain NCPPB 902]
ATGTCAGTCGCTCGCAGCAGCATCAAAAAGCAACCGGTAGACCGAAACGTCAGCGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGCGGCGTCAAGATGAAGGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGCGCAGAGCTTCGTCGCC
AGGGCATCACTCCTACAGTTGTAAAGACTAAACCAAAACCGCTTTTTGGCGCTGCGGGCAAGAAGATTTCGCCAAAGGAC
ATCGCATTCTTTAGCCGTCAAATGGCAACGATGATGAAGTCCGGAGTTCCCATAGTTGGCGCACTTGAAATTATCGGCGA
GGGGCACAAAAACCCTCGCATGAAAAAGATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGCTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTTCAGTTTGACGACTTGTATCGAAATCTAGTACGCGCGGGCGAGGGCGCCGGCGTATTGGAA
ACTGTCCTAGATACAGTTGCAAACTACAAAGAAAATATTGAGGCCCTTAAGGGCAAAATCAAAAAAGCCTTGTTTTATCC
TGCCATGGTAATGGCAGTCGCAATTATTGTCAGCGGCATACTACTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AGGGCTTTGGAGCAGAGCTTCCGGCCTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTACTGGTGGTTC
ATGCTACTAGCAAGTATCGCAGCGATAGCTGGCTTCATCTTTGCCTACAAGCGCTCGCCGCGCATGCGCCATGGAATGGA
CAGGCTTGTCTTGAAGTTTCCGGTGATCGGGCAAATTATGCATAATAGCTCGATTGCTCGTTTCGCTCGAACCACAGCCG
TCACGTTTAAAGCTGGCGTCCCCCTTGTAGAAGCCCTAAGTATTGTTGCTGGCGCGACTGGCAACAAAGTATATGAGGAA
GCTGTACTGCGGATGCGCGACGACGTCTCCGTGGGATACCCCGTGAACATGGCAATGAAGCAAGTAAACCTGTTCCCGCA
TATGGTGGTTCAAATGACATCTATTGGCGAGGAAGCGGGCGCGCTTGATGCGATGCTATTTAAAGTTGCAGAATATTTTG
AGCAAGAAGTGAATAATGCCGTCGACGCTCTAAGCAGTCTATTGGAGCCGTTAATCATGGTATTCATCGGTACGATTGTT
GGCGGCATGGTGATCGGCATGTATCTTCCGATTTTCAAACTTGGCTCGGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.854

96.411

0.51
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.737

0.505
  pilC Acinetobacter baumannii D1279779

51.861

96.411

0.5
  pilC Legionella pneumophila strain ERS1305867

51.232

97.129

0.498
  pilG Neisseria gonorrhoeae MS11

45.5

95.694

0.435
  pilG Neisseria meningitidis 44/76-A

45

95.694

0.431
  pilC Vibrio cholerae strain A1552

42.677

94.737

0.404
  pilC Vibrio campbellii strain DS40M4

39.394

94.737

0.373

Multiple sequence alignment