Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NX08_RS16990 Genome accession   NZ_CP034657
Coordinates   3665397..3666851 (+) Length   484 a.a.
NCBI ID   WP_039440776.1    Uniprot ID   -
Organism   Xanthomonas vasicola strain NCPPB 902     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3660397..3671851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX08_RS16965 (NX08_016965) - 3660398..3660700 (-) 303 WP_039440773.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NX08_RS16970 (NX08_016970) - 3660704..3661114 (-) 411 WP_080762842.1 DNA-binding protein -
  NX08_RS16975 (NX08_016975) sucD 3661217..3662092 (-) 876 WP_010366205.1 succinate--CoA ligase subunit alpha -
  NX08_RS16980 (NX08_016980) sucC 3662117..3663286 (-) 1170 WP_010366204.1 ADP-forming succinate--CoA ligase subunit beta -
  NX08_RS16985 (NX08_016985) - 3663519..3665132 (+) 1614 WP_010375222.1 HAMP domain-containing sensor histidine kinase -
  NX08_RS16990 (NX08_016990) pilR 3665397..3666851 (+) 1455 WP_039440776.1 sigma-54 dependent transcriptional regulator Regulator
  NX08_RS16995 (NX08_016995) pilB 3667322..3669055 (-) 1734 WP_039440778.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NX08_RS17000 (NX08_017000) - 3669117..3669551 (-) 435 WP_039440802.1 pilin -
  NX08_RS17005 (NX08_017005) pilE 3669626..3670066 (-) 441 WP_039440780.1 pilin Machinery gene
  NX08_RS17010 (NX08_017010) pilC 3670395..3671651 (+) 1257 WP_039440782.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52470.20 Da        Isoelectric Point: 6.9344

>NTDB_id=332168 NX08_RS16990 WP_039440776.1 3665397..3666851(+) (pilR) [Xanthomonas vasicola strain NCPPB 902]
MGRDPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTDIARRYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGAASESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRPAATPGSAAVEPREAVLDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=332168 NX08_RS16990 WP_039440776.1 3665397..3666851(+) (pilR) [Xanthomonas vasicola strain NCPPB 902]
TTGGGCCGCGACCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCTTGGGCCGCATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCTTGCCCGAT
GGCAATGGCATCGAACTGGTCACCGACATCGCCAGGCGGTACCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGTGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCCCCACCGCCGCCGCCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACGATCGGCAAGGTCGCGCGCAGCCAGGCACCGGTTTACAT
CGTCGGCGAATCGGGCGTCGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TCCCGGTCAACTGCGGCGCCATTCCTGCCGAGCTGATGGAGAGCGAATTTTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCACACGGCGGCACGTTGTTTCTGGACGAAGTAGCGGAATTACCGCT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGCCGCCAGTGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACACACAAGGACCTGGGCGACTTAGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAACTGCGCGTACCGCCGCTGCGCGAACGCGGCGGCGACCTGCCGCAATTGGCCGCCGCCATCAT
CGCGCGCCTGGCGCACAGCCACGGCCGCCCGATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCGCTGGCCGAGGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCTGCCCACGGCGGGCACCGCCCCGCCGCGACACCCGGCAGCGCTGCCGTCGAACCGCGCGAAGCCGT
CCTCGACATCGACCCCGCCTCGGCCGCCCTCCCCTCTTACATCGAGCAACTGGAACGCGCCGCAATCCAGAAAGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAGTTAGGCATCACCTTTCGGGCGCTGCGTTACAAGTTGAAGAAG
TTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.715

95.661

0.61
  pilR Acinetobacter baumannii strain A118

48.387

96.074

0.465

Multiple sequence alignment