Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   EHW89_RS08285 Genome accession   NZ_CP034543
Coordinates   1704265..1704738 (-) Length   157 a.a.
NCBI ID   WP_021002168.1    Uniprot ID   A0AAP2KBK9
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699265..1709738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS08275 (EHW89_08275) tsf 1702124..1703167 (-) 1044 WP_003026508.1 translation elongation factor Ts -
  EHW89_RS08280 (EHW89_08280) rpsB 1703250..1704032 (-) 783 WP_003026510.1 30S ribosomal protein S2 -
  EHW89_RS08285 (EHW89_08285) comR/comR2 1704265..1704738 (-) 474 WP_021002168.1 sigma-70 family RNA polymerase sigma factor Regulator
  EHW89_RS08290 (EHW89_08290) rplQ 1705165..1705551 (-) 387 WP_003026513.1 50S ribosomal protein L17 -
  EHW89_RS08295 (EHW89_08295) - 1705563..1706501 (-) 939 WP_003026514.1 DNA-directed RNA polymerase subunit alpha -
  EHW89_RS08300 (EHW89_08300) rpsK 1706546..1706929 (-) 384 WP_001118385.1 30S ribosomal protein S11 -
  EHW89_RS08305 (EHW89_08305) rpsM 1706949..1707314 (-) 366 WP_002262317.1 30S ribosomal protein S13 -
  EHW89_RS08310 (EHW89_08310) rpmJ 1707330..1707446 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  EHW89_RS08315 (EHW89_08315) infA 1707471..1707689 (-) 219 WP_001029883.1 translation initiation factor IF-1 -
  EHW89_RS08320 (EHW89_08320) - 1707805..1708443 (-) 639 WP_003031144.1 adenylate kinase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19361.19 Da        Isoelectric Point: 7.3491

>NTDB_id=331802 EHW89_RS08285 WP_021002168.1 1704265..1704738(-) (comR/comR2) [Streptococcus periodonticum strain KCOM 2412]
MEFKELYSKVRGIVLKCRREYYVHLWELSDWEQEGMLVLYQLVSRYPQLVEEDHQLYVYYKTKFRNHILDILRKQESQKR
KLDRQAYEEVSEIGHKLSLKELYLDELVILRDQLKSYQAQLSPEKQEQYERLLADERFKGRQAMIRELRAYLKDYSD

Nucleotide


Download         Length: 474 bp        

>NTDB_id=331802 EHW89_RS08285 WP_021002168.1 1704265..1704738(-) (comR/comR2) [Streptococcus periodonticum strain KCOM 2412]
ATGGAGTTCAAGGAGTTATATAGCAAGGTAAGAGGAATTGTGCTGAAGTGTCGGAGGGAATATTATGTCCACCTGTGGGA
ATTAAGCGATTGGGAACAAGAGGGGATGTTGGTGCTCTATCAGTTGGTGAGTCGCTATCCGCAGCTAGTAGAAGAAGATC
ATCAGCTCTATGTTTACTATAAGACCAAGTTCCGCAATCATATCCTGGACATCCTCCGTAAACAGGAAAGTCAAAAACGC
AAACTCGACCGTCAAGCCTATGAGGAAGTGAGTGAGATTGGTCACAAGCTCAGCCTAAAAGAACTATATCTGGATGAATT
GGTGATTCTCCGAGACCAGCTAAAGAGTTACCAAGCTCAACTGAGCCCAGAGAAACAGGAGCAGTATGAGCGCTTACTAG
CTGACGAACGGTTCAAAGGCCGCCAAGCTATGATTCGAGAATTAAGAGCCTACTTAAAAGACTATAGCGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599
  comX/comX2 Streptococcus pneumoniae TIGR4

54.545

98.089

0.535
  comX/comX1 Streptococcus pneumoniae TIGR4

54.545

98.089

0.535
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

54.545

98.089

0.535
  comX/comX1 Streptococcus pneumoniae R6

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae D39

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae Rx1

53.896

98.089

0.529
  comX/comX1 Streptococcus pneumoniae Rx1

53.896

98.089

0.529
  comX/comX1 Streptococcus pneumoniae D39

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae R6

53.896

98.089

0.529
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

53.896

98.089

0.529
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

53.247

98.089

0.522
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

52.597

98.089

0.516
  comX/sigX Streptococcus mutans UA159

49.359

99.363

0.49
  comX/sigX Streptococcus suis D9

48.387

98.726

0.478
  comX/sigX Streptococcus suis isolate S10

48.387

98.726

0.478
  comX/sigX Streptococcus suis P1/7

48.387

98.726

0.478
  comX Streptococcus salivarius SK126

45.455

98.089

0.446
  comX/sigX Streptococcus salivarius strain HSISS4

44.805

98.089

0.439
  comX Streptococcus thermophilus LMG 18311

44.805

98.089

0.439
  comX Streptococcus thermophilus LMD-9

44.805

98.089

0.439
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX Streptococcus sobrinus strain NIDR 6715-7

39.216

97.452

0.382
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

37.821

99.363

0.376

Multiple sequence alignment