Detailed information NTG0331744

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FQR64_RS05490
• Genome accession: NZ_CP042585
• Coordinates: 1035171..1036163 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain LD91-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1030171..1041163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FQR64_RS05460 (FQR64_05460)	ispD	1030232..1030942 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FQR64_RS05465 (FQR64_05465)	ispF	1030942..1031421 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FQR64_RS05470 (FQR64_05470)	truD	1031418..1032467 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
FQR64_RS05475 (FQR64_05475)	surE	1032448..1033209 (+)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
FQR64_RS05480 (FQR64_05480)	pcm	1033203..1033829 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FQR64_RS05485 (FQR64_05485)	nlpD	1034014..1035108 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FQR64_RS05490 (FQR64_05490)	rpoS	1035171..1036163 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FQR64_RS05495 (FQR64_05495)	-	1036284..1036691 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
FQR64_RS05500 (FQR64_05500)	-	1036838..1037431 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FQR64_RS05505 (FQR64_05505)	-	1037431..1038858 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FQR64_RS05510 (FQR64_05510)	-	1038869..1039105 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FQR64_RS05515 (FQR64_05515)	ygbN	1039144..1040508 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=331744 FQR64_RS05490 WP_000081550.1 1035171..1036163(+) (rpoS) [Escherichia coli strain LD91-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=331744 FQR64_RS05490 WP_000081550.1 1035171..1036163(+) (rpoS) [Escherichia coli strain LD91-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715