Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DDV21_RS09690 Genome accession   NZ_CP031733
Coordinates   2025099..2025581 (-) Length   160 a.a.
NCBI ID   WP_116878339.1    Uniprot ID   -
Organism   Streptococcus chenjunshii strain Z15     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2020099..2030581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV21_RS09660 (DDV21_009660) - 2020186..2020929 (-) 744 WP_116878333.1 M15 family metallopeptidase -
  DDV21_RS09665 (DDV21_009665) - 2020926..2021621 (-) 696 WP_116878334.1 histidine phosphatase family protein -
  DDV21_RS09670 (DDV21_009670) - 2021700..2023037 (-) 1338 WP_116878335.1 PFL family protein -
  DDV21_RS09675 (DDV21_009675) - 2023053..2023319 (-) 267 WP_116878336.1 ACT domain-containing protein -
  DDV21_RS09680 (DDV21_009680) - 2023465..2023701 (-) 237 WP_116878337.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  DDV21_RS09685 (DDV21_009685) - 2023830..2024519 (+) 690 WP_116878338.1 helix-turn-helix transcriptional regulator -
  DDV21_RS09690 (DDV21_009690) comX/sigX/comX2/sigX2 2025099..2025581 (-) 483 WP_116878339.1 hypothetical protein Regulator
  DDV21_RS09695 (DDV21_009695) - 2025946..2026989 (-) 1044 WP_116878340.1 glutathione S-transferase C-terminal domain-containing protein -
  DDV21_RS09700 (DDV21_009700) - 2027403..2028598 (+) 1196 Protein_1849 IS110 family transposase -
  DDV21_RS09705 (DDV21_009705) - 2028732..2029688 (-) 957 WP_116879048.1 glutathione S-transferase C-terminal domain-containing protein -
  DDV21_RS09710 (DDV21_009710) - 2029685..2029831 (-) 147 WP_116879049.1 ribosome-binding factor A -
  DDV21_RS09715 (DDV21_009715) - 2029833..2030318 (-) 486 WP_116879050.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 19571.54 Da        Isoelectric Point: 7.8661

>NTDB_id=310856 DDV21_RS09690 WP_116878339.1 2025099..2025581(-) (comX/sigX/comX2/sigX2) [Streptococcus chenjunshii strain Z15]
MREDEFDSLCKKVRPIILKLKRSYHIHLWDYNDWLQEGDIVLFSLLYEHPDLYYDELKLYVYFKTKFSNYLKDVIRQQES
YKRKFNKMAYEEISEIGHCVSDKSLALDDYVAYKEVIQEAENNLDGKEEREMFQKLLRGERFAGRQKMIKKLRPLFKDFK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=310856 DDV21_RS09690 WP_116878339.1 2025099..2025581(-) (comX/sigX/comX2/sigX2) [Streptococcus chenjunshii strain Z15]
ATGCGGGAAGATGAATTTGACAGTTTATGTAAAAAAGTTAGGCCGATTATTTTAAAGTTAAAACGCAGTTATCACATCCA
TTTGTGGGATTATAATGACTGGCTGCAGGAAGGAGATATCGTCCTGTTCAGTCTTTTGTATGAACACCCGGACCTATACT
ATGATGAACTGAAATTGTATGTCTATTTTAAAACCAAATTTTCTAACTATTTAAAAGATGTTATTCGCCAGCAGGAAAGT
TATAAACGGAAATTTAATAAAATGGCTTATGAGGAGATTAGCGAAATAGGGCATTGTGTGAGCGATAAAAGTTTAGCATT
AGATGATTACGTTGCTTATAAAGAAGTCATTCAGGAAGCGGAGAATAACTTAGATGGGAAAGAAGAGCGTGAAATGTTTC
AAAAACTCTTACGCGGAGAACGTTTTGCCGGGAGGCAAAAAATGATAAAAAAACTCCGTCCCTTATTCAAAGATTTTAAA
TAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

56.774

96.875

0.55
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

56.774

96.875

0.55
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

58.784

92.5

0.544
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

58.784

92.5

0.544
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

58.108

92.5

0.537
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

58.108

92.5

0.537
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

52.229

98.125

0.512
  comX/sigX Streptococcus mutans UA159

49.367

98.75

0.487
  comX Streptococcus thermophilus LMD-9

44.025

99.375

0.437
  comX Streptococcus thermophilus LMG 18311

44.025

99.375

0.437
  comX Streptococcus sobrinus strain NIDR 6715-7

44.025

99.375

0.437
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

44.805

96.25

0.431
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

44.805

96.25

0.431
  comX/sigX Streptococcus salivarius strain HSISS4

44.898

91.875

0.413
  comX Streptococcus salivarius SK126

44.898

91.875

0.413
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

42.208

96.25

0.406
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

40.909

96.25

0.394
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

40.909

96.25

0.394
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

40.909

96.25

0.394
  comX/comX1 Streptococcus pneumoniae TIGR4

41.06

94.375

0.388
  comX/comX2 Streptococcus pneumoniae R6

41.06

94.375

0.388
  comX/comX1 Streptococcus pneumoniae R6

41.06

94.375

0.388
  comX/comX2 Streptococcus pneumoniae TIGR4

41.06

94.375

0.388
  comX/comX2 Streptococcus pneumoniae Rx1

41.06

94.375

0.388
  comX/comX1 Streptococcus pneumoniae Rx1

41.06

94.375

0.388
  comX/comX2 Streptococcus pneumoniae D39

41.06

94.375

0.388
  comX/comX1 Streptococcus pneumoniae D39

41.06

94.375

0.388
  comX/sigX Streptococcus suis isolate S10

38.462

97.5

0.375
  comX/sigX Streptococcus suis P1/7

38.462

97.5

0.375
  comX/sigX Streptococcus suis D9

38.462

97.5

0.375

Multiple sequence alignment