Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Xcom_RS06560 Genome accession   NZ_CP031059
Coordinates   1507309..1507749 (+) Length   146 a.a.
NCBI ID   WP_078590287.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. commiphoreae strain LMG 26789     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1502309..1512749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Xcom_RS21515 - 1503038..1503736 (-) 699 WP_162998399.1 hypothetical protein -
  Xcom_RS06545 (Xcom_06550) coaE 1504231..1504842 (-) 612 WP_007973907.1 dephospho-CoA kinase -
  Xcom_RS06550 (Xcom_06555) - 1504856..1505719 (-) 864 WP_122272419.1 A24 family peptidase -
  Xcom_RS06555 (Xcom_06560) pilC 1505726..1506982 (-) 1257 WP_057685777.1 type II secretion system F family protein Machinery gene
  Xcom_RS06560 (Xcom_06565) pilE 1507309..1507749 (+) 441 WP_078590287.1 pilin Machinery gene
  Xcom_RS06565 (Xcom_06570) - 1507827..1508261 (+) 435 WP_078590286.1 pilin -
  Xcom_RS06570 (Xcom_06575) pilB 1508325..1510061 (+) 1737 WP_122272420.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Xcom_RS06575 (Xcom_06580) pilR 1510276..1511730 (-) 1455 WP_206212849.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14944.04 Da        Isoelectric Point: 9.0090

>NTDB_id=303002 Xcom_RS06560 WP_078590287.1 1507309..1507749(+) (pilE) [Xanthomonas axonopodis pv. commiphoreae strain LMG 26789]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYLARSQVSEGLSLASGAKTAVAETYANTGAFPANNAAAGLEAAANIKG
KYITSVTVSSGGVITALFNNSNAKLSGKNLVLTPTDNNGSISWGCSNGTTIDQKYLPTSCRTAATP

Nucleotide


Download         Length: 441 bp        

>NTDB_id=303002 Xcom_RS06560 WP_078590287.1 1507309..1507749(+) (pilE) [Xanthomonas axonopodis pv. commiphoreae strain LMG 26789]
ATGAAGAAGCAAAACGGTTTTACTTTGATCGAACTCATGATCGTGGTCGCGATCATTGCGATCCTGGCTGCCATTGCTCT
GCCGGCTTATCAGGACTACCTCGCGCGTTCGCAGGTCTCTGAAGGTCTGTCGCTGGCGTCGGGTGCAAAGACCGCCGTTG
CTGAGACCTATGCCAATACTGGTGCATTCCCGGCCAACAACGCAGCTGCTGGTCTTGAGGCTGCTGCAAACATCAAAGGT
AAGTACATCACCTCGGTGACCGTTAGCTCTGGCGGCGTCATCACTGCGCTGTTTAATAACTCCAATGCAAAGCTGAGTGG
TAAGAACCTTGTCCTGACTCCGACGGACAACAACGGCTCGATCAGCTGGGGTTGCAGCAATGGCACCACCATCGATCAGA
AGTATCTGCCTACCTCTTGCCGTACTGCGGCTACCCCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

47.799

100

0.521
  pilE Neisseria gonorrhoeae strain FA1090

47.097

100

0.5
  pilA2 Legionella pneumophila str. Paris

50

95.89

0.479
  pilA/pilA1 Eikenella corrodens VA1

45.161

100

0.479
  pilA2 Legionella pneumophila strain ERS1305867

49.286

95.89

0.473
  comP Acinetobacter baylyi ADP1

46

100

0.473
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

36.413

100

0.459
  pilA Acinetobacter baumannii strain A118

42.953

100

0.438
  pilA Ralstonia pseudosolanacearum GMI1000

37.805

100

0.425
  pilA Pseudomonas aeruginosa PAK

39.474

100

0.411
  pilA Vibrio cholerae strain A1552

38.816

100

0.404
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.816

100

0.404
  pilA Vibrio cholerae C6706

38.816

100

0.404
  pilA Vibrio campbellii strain DS40M4

38.255

100

0.39
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.849

95.205

0.37

Multiple sequence alignment