Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Xcom_RS06575 Genome accession   NZ_CP031059
Coordinates   1510276..1511730 (-) Length   484 a.a.
NCBI ID   WP_206212849.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. commiphoreae strain LMG 26789     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1505276..1516730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Xcom_RS06555 (Xcom_06560) pilC 1505726..1506982 (-) 1257 WP_057685777.1 type II secretion system F family protein Machinery gene
  Xcom_RS06560 (Xcom_06565) pilE 1507309..1507749 (+) 441 WP_078590287.1 pilin Machinery gene
  Xcom_RS06565 (Xcom_06570) - 1507827..1508261 (+) 435 WP_078590286.1 pilin -
  Xcom_RS06570 (Xcom_06575) pilB 1508325..1510061 (+) 1737 WP_122272420.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Xcom_RS06575 (Xcom_06580) pilR 1510276..1511730 (-) 1455 WP_206212849.1 sigma-54 dependent transcriptional regulator Regulator
  Xcom_RS06580 (Xcom_06585) - 1511998..1513611 (-) 1614 WP_122273517.1 HAMP domain-containing sensor histidine kinase -
  Xcom_RS06585 (Xcom_06590) sucC 1513843..1515012 (+) 1170 WP_122272421.1 ADP-forming succinate--CoA ligase subunit beta -
  Xcom_RS06590 (Xcom_06595) sucD 1515037..1515912 (+) 876 WP_029820064.1 succinate--CoA ligase subunit alpha -
  Xcom_RS06595 (Xcom_06600) - 1516082..1516426 (+) 345 WP_008577787.1 ribbon-helix-helix domain-containing protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52517.30 Da        Isoelectric Point: 6.8289

>NTDB_id=303004 Xcom_RS06575 WP_206212849.1 1510276..1511730(-) (pilR) [Xanthomonas axonopodis pv. commiphoreae strain LMG 26789]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAPGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAVPNGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=303004 Xcom_RS06575 WP_206212849.1 1510276..1511730(-) (pilR) [Xanthomonas axonopodis pv. commiphoreae strain LMG 26789]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCTTGCGCATCAGCACCG
CGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGACCGACATGCGGTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCCCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGACGCATTGAATCACTACGGCT
TCCCAGGCAACGTACGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCTGTCCCCAACGGAGGTGCCGCGGCCGAGCCGCGCGAAGCCGT
CGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGCCGCGATCCAGAAGGCACTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGCTGCGTTACAAGTTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment