Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   Xcom_RS06570 Genome accession   NZ_CP031059
Coordinates   1508325..1510061 (+) Length   578 a.a.
NCBI ID   WP_122272420.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. commiphoreae strain LMG 26789     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1503325..1515061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Xcom_RS06545 (Xcom_06550) coaE 1504231..1504842 (-) 612 WP_007973907.1 dephospho-CoA kinase -
  Xcom_RS06550 (Xcom_06555) - 1504856..1505719 (-) 864 WP_122272419.1 A24 family peptidase -
  Xcom_RS06555 (Xcom_06560) pilC 1505726..1506982 (-) 1257 WP_057685777.1 type II secretion system F family protein Machinery gene
  Xcom_RS06560 (Xcom_06565) pilE 1507309..1507749 (+) 441 WP_078590287.1 pilin Machinery gene
  Xcom_RS06565 (Xcom_06570) - 1507827..1508261 (+) 435 WP_078590286.1 pilin -
  Xcom_RS06570 (Xcom_06575) pilB 1508325..1510061 (+) 1737 WP_122272420.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Xcom_RS06575 (Xcom_06580) pilR 1510276..1511730 (-) 1455 WP_206212849.1 sigma-54 dependent transcriptional regulator Regulator
  Xcom_RS06580 (Xcom_06585) - 1511998..1513611 (-) 1614 WP_122273517.1 HAMP domain-containing sensor histidine kinase -
  Xcom_RS06585 (Xcom_06590) sucC 1513843..1515012 (+) 1170 WP_122272421.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62615.74 Da        Isoelectric Point: 5.7615

>NTDB_id=303003 Xcom_RS06570 WP_122272420.1 1508325..1510061(+) (pilB) [Xanthomonas axonopodis pv. commiphoreae strain LMG 26789]
MSVLSTANLVGITGIARRLVQDGALEESAARSAMDQAALAKVPLPQWFSEKKLVAASQLAAANAVEFGMPLLDVSAFDAS
QNAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEAILVDEDQIRRTLEQWQASNASLGSSLG
NDDEEMGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEADQQK
LFLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNHCKRKSTLP
ENALLAEGFTPAQIAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQAIGIRDLRQSALM
KAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=303003 Xcom_RS06570 WP_122272420.1 1508325..1510061(+) (pilB) [Xanthomonas axonopodis pv. commiphoreae strain LMG 26789]
ATGAGCGTTTTATCGACCGCAAATCTCGTTGGAATCACCGGAATTGCCCGCAGGCTGGTGCAGGATGGCGCATTGGAGGA
AAGCGCGGCTCGAAGCGCGATGGATCAGGCTGCTCTTGCGAAAGTTCCACTGCCTCAGTGGTTCTCGGAGAAAAAGCTTG
TTGCTGCCTCGCAGCTGGCGGCGGCCAATGCAGTCGAGTTCGGCATGCCACTACTGGACGTATCGGCATTCGACGCCAGC
CAGAACGCAGTAAAGCTCGTCAGTGAAGAGTTGCTCCAGAAGCACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTT
GTTCGTGGGGGTGAGCAACCCGACCCAGACCCGTGCGCTGGACGACATCAAGTTCCATACGAACCTGGTGGTCGAGGCGA
TCCTCGTCGACGAAGATCAGATCCGCCGGACGCTCGAGCAGTGGCAGGCCAGCAATGCGTCGTTGGGTTCTTCGCTTGGC
AACGACGACGAGGAAATGGGGGATCTGGACGTCTCGGCCGGCGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGA
TGCCAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCAGGCGGGGAGCCTCGGACA
TCCATTTCGAGCCCTATGAAGACGATTACCGGGTGCGGTTGCGGATCGATGGGCTGCTCAAGAATGTGGCCAAGGCGCCG
GTGAAGCTGAACCAGCGCATCGCGGCCCGCCTGAAAGTGATGTCGCAGCTAGATATCGCGGAGAAGCGGGTGCCGCAGGA
CGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGCGTCAGCACCTTGCCGACGCTGTTCGGCGAGA
AGGTGGTGCTGCGTATCCTGGACGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTGGGCTACGAGGCGGACCAGCAGAAG
CTGTTCCTGGAGGCGATCCACAAGCCGTACGGGATGGTGCTGGTGACCGGGCCGACTGGTTCGGGCAAGACGGTGTCGCT
GTATACGGCGCTGGGCATCCTCAACGACGAGACGCGCAACATCTCCACCGCCGAGGATCCGGTCGAAATCCGCTTGCCAG
GCGTCAACCAGGTGCAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCGGCCTTGCGCTCGTTCCTGCGCCAGGATCCG
GACATCATCATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATCGCGATCAAGGCGGCGCAGACCGGCCACATGGT
GCTTTCGACGCTGCATACCAACGATGCGCCGCAGACCATCGCACGTCTGATGAACATGGGCATTGCGCCCTACAACATCA
CTTCGTCGGTGACGTTGGTGATCGCGCAGCGTCTGGCGCGGCGGTTGTGCAACCACTGCAAGCGCAAGTCGACGCTGCCG
GAGAATGCGTTGCTGGCCGAAGGCTTCACGCCGGCGCAGATCGCCGCCGGGATCGAGCTGTACGAGGCGGTCGGTTGCGA
CGAGTGCACCGAAGGCTACAAGGGGCGTACCGGTATCTACCAGGTCATGCCGATGACCGACGAGATCGGCGCGATCGTGC
TGGAGGGCGGCAATGCGATGCAGATTGCCGAGGCCGCGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATG
AAGGCTGCGCACGGGGTGACCAGCCTGGCCGAGATCAATCGGGTGACCAAGGACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(201-468)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(50-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

55.786

100

0.559
  pilB Acinetobacter baylyi ADP1

54.75

100

0.548
  pilB Legionella pneumophila strain ERS1305867

52.197

98.443

0.514
  pilB Vibrio cholerae strain A1552

49.22

99.827

0.491
  pilF Neisseria gonorrhoeae MS11

49.296

98.27

0.484
  pilB Vibrio parahaemolyticus RIMD 2210633

46.964

96.886

0.455
  pilB Vibrio campbellii strain DS40M4

46.046

98.443

0.453

Multiple sequence alignment