Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Xcom_RS06555 Genome accession   NZ_CP031059
Coordinates   1505726..1506982 (-) Length   418 a.a.
NCBI ID   WP_057685777.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. commiphoreae strain LMG 26789     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1500726..1511982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Xcom_RS06530 (Xcom_06535) - 1500984..1501379 (-) 396 WP_122272418.1 SymE family type I addiction module toxin -
  Xcom_RS06540 (Xcom_06545) - 1501922..1503024 (+) 1103 WP_094030629.1 IS3 family transposase -
  Xcom_RS21515 - 1503038..1503736 (-) 699 WP_162998399.1 hypothetical protein -
  Xcom_RS06545 (Xcom_06550) coaE 1504231..1504842 (-) 612 WP_007973907.1 dephospho-CoA kinase -
  Xcom_RS06550 (Xcom_06555) - 1504856..1505719 (-) 864 WP_122272419.1 A24 family peptidase -
  Xcom_RS06555 (Xcom_06560) pilC 1505726..1506982 (-) 1257 WP_057685777.1 type II secretion system F family protein Machinery gene
  Xcom_RS06560 (Xcom_06565) pilE 1507309..1507749 (+) 441 WP_078590287.1 pilin Machinery gene
  Xcom_RS06565 (Xcom_06570) - 1507827..1508261 (+) 435 WP_078590286.1 pilin -
  Xcom_RS06570 (Xcom_06575) pilB 1508325..1510061 (+) 1737 WP_122272420.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Xcom_RS06575 (Xcom_06580) pilR 1510276..1511730 (-) 1455 WP_206212849.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45925.32 Da        Isoelectric Point: 10.3003

>NTDB_id=303001 Xcom_RS06555 WP_057685777.1 1505726..1506982(-) (pilC) [Xanthomonas axonopodis pv. commiphoreae strain LMG 26789]
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=303001 Xcom_RS06555 WP_057685777.1 1505726..1506982(-) (pilC) [Xanthomonas axonopodis pv. commiphoreae strain LMG 26789]
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAACGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGCGTCAAGATGAAAGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGCGCAGAGCTTCGTCGTC
AGGGAATCACGCCCACAGTTGTAAAGACTAAACCAAAACCACTTTTCGGCGCTGCGGGCAAAAAAATTTCGCCAAAGGAC
ATCGCATTCTTCAGCCGTCAGATGGCAACGATGATGAAGTCCGGAGTCCCCATCGTTGGCGCACTTGAGATTATCGGTGA
GGGGCACAAAAACCCTCGCATGAAAAAGATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGCTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAACCTGGTTCGCGCGGGCGAAGGCGCTGGCGTATTGGAA
ACTGTTCTAGATACAGTTGCGAACTATAAAGAAAATATCGAAGCCCTTAAAGGCAAAATCAAAAAAGCCCTGTTTTATCC
CGCCATGGTAATGGCCGTCGCAATTATTGTCAGCGGCATCCTCCTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AGGGATTTGGAGCAGAGCTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCGAGTGTCGCAGCGATAGCCGGTTTCATCTTTGCCTACAAACGCTCGCCGCGCATGCGCCATGGAATGGA
CAGGCTTGTCTTGAAGTTTCCAGTGATCGGGCAGATTATGCACAACAGCTCCATTGCTCGATTTGCCCGAACCACGGCGG
TCACATTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGCATTGTTGCCGGCGCGACTGGCAACAAGGTCTATGAGGAA
GCTGTACTGCGGATGCGCGACGACGTCTCTGTGGGATACCCCGTGAACATGGCTATGAAGCAAGTAAACCTGTTTCCTCA
TATGGTGGTTCAAATGACATCCATTGGCGAGGAAGCGGGCGCTCTTGATGCCATGCTATTTAAAGTAGCCGAGTATTTTG
AGCAGGAAGTGAATAACGCCGTGGACGCGCTGAGCAGCCTGTTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGTATGGTGATCGGCATGTATCTCCCAATTTTCAAACTTGGCTCGGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.854

96.411

0.51
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.737

0.507
  pilC Acinetobacter baumannii D1279779

51.861

96.411

0.5
  pilC Legionella pneumophila strain ERS1305867

51.232

97.129

0.498
  pilG Neisseria gonorrhoeae MS11

45.5

95.694

0.435
  pilG Neisseria meningitidis 44/76-A

45

95.694

0.431
  pilC Vibrio cholerae strain A1552

42.677

94.737

0.404
  pilC Vibrio campbellii strain DS40M4

39.646

94.737

0.376
  pilC Thermus thermophilus HB27

37.94

95.215

0.361

Multiple sequence alignment