Detailed information NTG0288704

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: DCO16_RS11110
• Genome accession: NZ_CP028941
• Coordinates: 2143774..2144472 (+)
• Length: 232 a.a.
• NCBI ID: WP_173943700.1
• Uniprot ID: A0A6M9Q4R3
• Organism: Polynucleobacter antarcticus strain LimPoW16
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 2138774..2149472

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DCO16_RS11090 (DCO16_11065)	-	2140234..2140815 (-)	582	WP_173943696.1	DUF4390 domain-containing protein	-
DCO16_RS11095 (DCO16_11070)	rsmB	2140812..2142125 (-)	1314	WP_173943697.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
DCO16_RS11100 (DCO16_11075)	fmt	2142196..2143179 (-)	984	WP_173943698.1	methionyl-tRNA formyltransferase	-
DCO16_RS11105 (DCO16_11080)	def	2143187..2143702 (-)	516	WP_217426670.1	peptide deformylase	-
DCO16_RS11110 (DCO16_11085)	dprA	2143774..2144472 (+)	699	WP_173943700.1	DNA-processing protein DprA	Machinery gene
DCO16_RS11115 (DCO16_11090)	-	2144668..2147346 (+)	2679	WP_173943701.1	DNA topoisomerase III	-
DCO16_RS11305 (DCO16_11095)	mnmC	2147406..2148407 (-)	1002	Protein_2193	FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	-

Sequence

Protein

• Length: 232 a.a.
• Molecular weight: 24879.84 Da
• Isoelectric Point: 8.9299

>NTDB_id=288704 DCO16_RS11110 WP_173943700.1 2143774..2144472(+) (dprA) [Polynucleobacter antarcticus strain LimPoW16]
MQTLQTMDIQAISHTDPQYPDRLLALYDPPSPLYIYGEAALLKMPMIAIVGSRMPSAEGVKNALYFARALSKAGFLILSG
MARGIDGAAHRGALSLGEGHRTVAVCGTGLDITYPREHQLLADSIGRRGLLLSELAPGVGPRPSHFPRRNRIIAALSLGV
LVIEAAEKSGSLITARLATELGREVFALPGSLYNPLSSGCHQLIQQGAKLTQHPQDVLDELSIYLKTSFKAT

Nucleotide

• Length: 699 bp

>NTDB_id=288704 DCO16_RS11110 WP_173943700.1 2143774..2144472(+) (dprA) [Polynucleobacter antarcticus strain LimPoW16]
ATGCAGACACTTCAAACAATGGATATCCAAGCTATAAGTCATACAGACCCTCAGTACCCAGACCGCTTGCTTGCTTTATA
TGACCCTCCCAGTCCGCTGTATATATATGGTGAAGCTGCGCTTCTCAAGATGCCCATGATCGCCATTGTGGGCTCGCGCA
TGCCTAGTGCCGAGGGGGTGAAAAATGCGCTCTATTTTGCCCGGGCCCTATCTAAAGCGGGTTTCTTAATCCTTTCTGGG
ATGGCTCGTGGAATTGATGGGGCAGCGCATCGCGGAGCACTTAGCCTTGGAGAGGGCCATCGCACTGTTGCGGTATGTGG
CACTGGGCTGGATATTACCTATCCACGAGAACACCAATTGCTAGCAGATAGCATTGGTCGGCGAGGCTTGTTGCTGTCTG
AGCTCGCCCCAGGAGTAGGGCCAAGACCGAGCCACTTCCCTCGCAGAAATCGCATCATTGCTGCACTTTCATTAGGGGTA
CTTGTAATTGAGGCTGCTGAAAAATCAGGCTCCCTCATCACGGCCAGGCTCGCAACTGAACTGGGAAGAGAGGTGTTTGC
CCTGCCAGGGTCGCTCTACAACCCACTTTCAAGTGGTTGTCACCAGCTTATTCAACAGGGGGCCAAGTTAACGCAACACC
CGCAAGACGTTCTGGATGAGCTGTCAATCTACCTAAAAACATCATTTAAGGCCACTTAA

Domains

Predicted by InterproScan.

• DNA recombination-mediator protein A (DNA_processg_A) (4-211)

3D structure

• AlphaFold DB: A0A6M9Q4R3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Legionella pneumophila strain ERS1305867	53.774	91.379	0.491
dprA	Vibrio cholerae strain A1552	51.643	91.81	0.474
dprA	Vibrio campbellii strain DS40M4	50.691	93.534	0.474
dprA	Acinetobacter baumannii D1279779	50.718	90.086	0.457
dprA	Acinetobacter baumannii strain A118	50.718	90.086	0.457
dprA	Acinetobacter baylyi ADP1	47.964	95.259	0.457
dprA/cilB/dalA	Streptococcus pneumoniae Rx1	49.296	91.81	0.453
dprA	Neisseria gonorrhoeae strain FA1090	49.296	91.81	0.453
dprA/cilB/dalA	Streptococcus mitis NCTC 12261	49.296	91.81	0.453
dprA/cilB/dalA	Streptococcus pneumoniae D39	49.296	91.81	0.453
dprA/cilB/dalA	Streptococcus pneumoniae R6	49.296	91.81	0.453
dprA/cilB/dalA	Streptococcus pneumoniae TIGR4	49.296	91.81	0.453
dprA/cilB/dalA	Streptococcus mitis SK321	48.837	92.672	0.453
dprA	Neisseria gonorrhoeae MS11	48.826	91.81	0.448
dprA	Neisseria meningitidis strain C311	47.887	91.81	0.44
dprA	Streptococcus mutans UA159	47.887	91.81	0.44
dprA	Neisseria meningitidis MC58	47.887	91.81	0.44
dprA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	46.575	94.397	0.44
dprA	Glaesserella parasuis strain SC1401	47.196	92.241	0.435
dprA	Haemophilus influenzae Rd KW20	46.919	90.948	0.427
dprA	Bacillus subtilis subsp. subtilis str. 168	45.794	92.241	0.422
dprA	Lactococcus lactis subsp. cremoris KW2	45.714	90.517	0.414
dprA	Thermus thermophilus HB27	43.318	93.534	0.405
dprA	Latilactobacillus sakei subsp. sakei 23K	38.596	98.276	0.379