Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SGO_RS10015 Genome accession   NC_009785
Coordinates   2111982..2112572 (-) Length   196 a.a.
NCBI ID   WP_012131019.1    Uniprot ID   A8AZT8
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2106982..2117572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS09985 (SGO_2044) spx 2107067..2107465 (-) 399 WP_008809970.1 transcriptional regulator Spx -
  SGO_RS09990 (SGO_2045) recA 2107552..2108703 (-) 1152 WP_012131014.1 recombinase RecA Machinery gene
  SGO_RS09995 (SGO_2046) cinA 2108761..2110017 (-) 1257 WP_012131015.1 competence/damage-inducible protein A Machinery gene
  SGO_RS10000 (SGO_2047) - 2110292..2110702 (+) 411 WP_012131016.1 helix-turn-helix domain-containing protein -
  SGO_RS10005 (SGO_2048) - 2110754..2111413 (-) 660 WP_041789818.1 CPBP family intramembrane glutamic endopeptidase -
  SGO_RS10010 (SGO_2049) - 2111418..2111972 (-) 555 WP_012131018.1 DNA-3-methyladenine glycosylase I -
  SGO_RS10015 (SGO_2050) ruvA 2111982..2112572 (-) 591 WP_012131019.1 Holliday junction branch migration protein RuvA Machinery gene
  SGO_RS10020 (SGO_2051) - 2112742..2113245 (+) 504 WP_012131020.1 helix-turn-helix domain-containing protein -
  SGO_RS10025 (SGO_2052) - 2113229..2113750 (+) 522 WP_012131021.1 RDD family protein -
  SGO_RS10030 (SGO_2053) hexB 2113786..2115729 (-) 1944 WP_012131022.1 DNA mismatch repair endonuclease MutL Machinery gene
  SGO_RS10035 (SGO_2054) - 2115914..2116354 (+) 441 WP_012131023.1 LytTR family DNA-binding domain-containing protein -
  SGO_RS10040 (SGO_2055) - 2116351..2116821 (+) 471 WP_012131024.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21637.06 Da        Isoelectric Point: 5.6978

>NTDB_id=27116 SGO_RS10015 WP_012131019.1 2111982..2112572(-) (ruvA) [Streptococcus gordonii str. Challis substr. CH1]
MYEYFKGIISKITAKYIVLEVNSIGYILHVANPYAYSGHLHQEAKVYVHQVVREDAELLYGFATEEEKQLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVAADGLAESKAPVQTVDNQELEEAMEAML
ALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=27116 SGO_RS10015 WP_012131019.1 2111982..2112572(-) (ruvA) [Streptococcus gordonii str. Challis substr. CH1]
ATGTACGAATATTTTAAAGGAATTATTAGCAAAATTACAGCTAAATACATTGTATTGGAAGTCAACTCTATCGGCTATAT
TCTTCATGTGGCCAACCCCTATGCTTACTCAGGTCATCTCCATCAGGAAGCCAAGGTCTATGTCCACCAGGTGGTGAGAG
AAGACGCGGAGCTCCTGTACGGTTTTGCGACCGAGGAGGAGAAGCAGCTCTTTCTCAGCTTGATTTCAGTCTCAGGTATT
GGCCCAGTGTCTGCCCTAGCTATTATTGCGGCGGATGATAATGCTGGCTTAGTGCAAGCCATTGAGCAGAAAAACATCAC
CTACCTGACCAAGTTTCCTAAGATTGGCAAGAAGACAGCCCAGCAGATGGTGCTGGACTTGGAAGGAAAGGTAGTGGCGG
CGGATGGTCTGGCAGAAAGCAAGGCACCTGTCCAGACTGTGGATAATCAGGAGCTGGAAGAAGCCATGGAAGCCATGCTG
GCTCTGGGCTACAAAGCTACTGAACTCAAGAAAATCAAGAAATTCTTTGAGGGGACAACGGATACAGCCGAAAACTATAT
CAAGTCTGCTCTCAAGATGTTGGTGAAGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AZT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

85.787

100

0.862
  ruvA Streptococcus pneumoniae D39

85.787

100

0.862
  ruvA Streptococcus pneumoniae TIGR4

85.279

100

0.857
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.346

100

0.439

Multiple sequence alignment