Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   CWI26_RS00460 Genome accession   NZ_CP025043
Coordinates   80920..81390 (+) Length   156 a.a.
NCBI ID   WP_099806645.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 75920..86390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS00430 (CWI26_00430) recA 77133..78284 (+) 1152 WP_004195473.1 recombinase RecA Machinery gene
  CWI26_RS00435 (CWI26_00435) spx 78444..78842 (+) 399 WP_004195475.1 transcriptional regulator Spx -
  CWI26_RS00440 (CWI26_00440) - 78949..79215 (+) 267 WP_004195477.1 IreB family regulatory phosphoprotein -
  CWI26_RS00445 (CWI26_00445) ruvX 79215..79634 (+) 420 WP_099780101.1 Holliday junction resolvase RuvX -
  CWI26_RS00450 (CWI26_00450) - 79646..79963 (+) 318 WP_004195480.1 DUF1292 domain-containing protein -
  CWI26_RS00455 (CWI26_00455) - 80273..80818 (+) 546 WP_233486261.1 nucleotidyltransferase family protein -
  CWI26_RS00460 (CWI26_00460) comX/sigX 80920..81390 (+) 471 WP_099806645.1 sigma-70 family RNA polymerase sigma factor Regulator
  CWI26_RS00465 (CWI26_00465) - 81606..82358 (+) 753 WP_099806646.1 TIR domain-containing protein -
  CWI26_RS00470 (CWI26_00470) - 82355..85051 (+) 2697 WP_099871689.1 SEC10/PgrA surface exclusion domain-containing protein -
  CWI26_RS00475 (CWI26_00475) rpsJ 85245..85553 (+) 309 WP_002939332.1 30S ribosomal protein S10 -
  CWI26_RS00480 (CWI26_00480) rplC 85763..86389 (+) 627 WP_011921686.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 19146.90 Da        Isoelectric Point: 8.0356

>NTDB_id=257585 CWI26_RS00460 WP_099806645.1 80920..81390(+) (comX/sigX) [Streptococcus suis strain AH681]
MEFEKVYDSVKGIVNKARKEYYIKLWEKEDWDQEGMMTLFELLEDQPWLADEQEQLYCYFKVKFRNRVKDRVRRQESQKR
KFDRMPHEDIHDLSHVIQSPGLVNDELLLLRGALRDYRKNLSMDQLENYEKLISGQSFNGRRKMIRDLQIHLKDFR

Nucleotide


Download         Length: 471 bp        

>NTDB_id=257585 CWI26_RS00460 WP_099806645.1 80920..81390(+) (comX/sigX) [Streptococcus suis strain AH681]
ATGGAATTTGAAAAGGTCTATGATAGCGTAAAAGGGATTGTCAACAAGGCTCGAAAAGAGTACTATATTAAATTATGGGA
AAAGGAAGATTGGGATCAAGAGGGCATGATGACCTTATTTGAATTATTGGAAGATCAACCGTGGTTAGCTGATGAGCAAG
AACAGTTGTATTGCTATTTTAAAGTGAAATTTAGAAATCGGGTCAAAGACCGTGTACGCAGACAAGAAAGTCAGAAGCGT
AAGTTTGACCGCATGCCACATGAAGACATTCATGATTTATCTCACGTTATACAATCGCCAGGTTTAGTCAATGACGAGCT
ATTGTTGTTGAGAGGTGCCTTGAGAGATTATCGGAAAAATTTGTCTATGGACCAATTGGAAAATTATGAAAAACTAATTA
GTGGTCAGAGTTTCAATGGTCGTCGAAAAATGATACGTGATCTACAAATCCATTTGAAGGATTTTCGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

86.538

100

0.865
  comX/sigX Streptococcus suis isolate S10

85.897

100

0.859
  comX/sigX Streptococcus suis P1/7

85.897

100

0.859
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

49.032

99.359

0.487
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

49.032

99.359

0.487
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

46.405

98.077

0.455
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

45.752

98.077

0.449
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

45.098

98.077

0.442
  comX/comX2 Streptococcus pneumoniae Rx1

45.695

96.795

0.442
  comX/comX1 Streptococcus pneumoniae Rx1

45.695

96.795

0.442
  comX/comX2 Streptococcus pneumoniae D39

45.695

96.795

0.442
  comX/comX1 Streptococcus pneumoniae D39

45.695

96.795

0.442
  comX/comX2 Streptococcus pneumoniae R6

45.695

96.795

0.442
  comX/comX1 Streptococcus pneumoniae R6

45.695

96.795

0.442
  comX/sigX Streptococcus mutans UA159

43.871

99.359

0.436
  comX/comX2 Streptococcus pneumoniae TIGR4

45.033

96.795

0.436
  comX/comX1 Streptococcus pneumoniae TIGR4

45.033

96.795

0.436
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

44.444

98.077

0.436
  comX Streptococcus thermophilus LMG 18311

41.176

98.077

0.404
  comX Streptococcus thermophilus LMD-9

41.176

98.077

0.404
  comX Streptococcus salivarius SK126

40.523

98.077

0.397
  comX/sigX Streptococcus salivarius strain HSISS4

40.523

98.077

0.397
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

39.49

100

0.397
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

39.355

99.359

0.391
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

39.355

99.359

0.391
  comX Streptococcus sobrinus strain NIDR 6715-7

39.869

98.077

0.391
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

38.71

99.359

0.385
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

38.71

99.359

0.385
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

38.71

99.359

0.385
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

38.71

99.359

0.385

Multiple sequence alignment