Detailed information
Bioinformatically predicted
Overview
| Name | comX/sigX | Type | Regulator |
| Locus tag | CR542_RS00080 | Genome accession | NZ_CP024126 |
| Coordinates | 16137..16607 (+) | Length | 156 a.a. |
| NCBI ID | WP_002936602.1 | Uniprot ID | A0A075SE61 |
| Organism | Streptococcus suis strain HA0609 | ||
| Function | activate transcription of late competence genes (predicted from homology) Competence regulation |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 13841..58684 | 16137..16607 | within | 0 |
Gene organization within MGE regions
Location: 13841..58684
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR542_RS00075 (CR542_00075) | ftsH | 13841..15811 (+) | 1971 | WP_004194314.1 | ATP-dependent zinc metalloprotease FtsH | - |
| CR542_RS00080 (CR542_00080) | comX/sigX | 16137..16607 (+) | 471 | WP_002936602.1 | sigma-70 family RNA polymerase sigma factor | Regulator |
| CR542_RS00185 (CR542_00185) | mreC | 23910..24746 (+) | 837 | WP_009908845.1 | rod shape-determining protein MreC | - |
| CR542_RS00190 (CR542_00190) | mreD | 24736..25251 (+) | 516 | WP_002935339.1 | rod shape-determining protein MreD | - |
| CR542_RS00195 (CR542_00195) | pcsB | 25336..26592 (+) | 1257 | WP_002935338.1 | peptidoglycan hydrolase PcsB | - |
| CR542_RS00200 (CR542_00200) | - | 26695..27660 (+) | 966 | WP_024409289.1 | ribose-phosphate diphosphokinase | - |
| CR542_RS00205 (CR542_00205) | - | 27751..28929 (+) | 1179 | WP_002935336.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CR542_RS00210 (CR542_00210) | recO | 28916..29698 (+) | 783 | WP_002935335.1 | DNA repair protein RecO | - |
| CR542_RS00215 (CR542_00215) | plsX | 29695..30702 (+) | 1008 | WP_002935334.1 | phosphate acyltransferase PlsX | - |
| CR542_RS00220 (CR542_00220) | - | 30695..30943 (+) | 249 | WP_002935333.1 | phosphopantetheine-binding protein | - |
| CR542_RS00225 (CR542_00225) | purC | 31061..31768 (+) | 708 | WP_002935328.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| CR542_RS00230 (CR542_00230) | - | 31781..35499 (+) | 3719 | Protein_26 | phosphoribosylformylglycinamidine synthase | - |
| CR542_RS00235 (CR542_00235) | purF | 35502..36956 (+) | 1455 | WP_009908857.1 | amidophosphoribosyltransferase | - |
| CR542_RS00240 (CR542_00240) | purM | 37012..38034 (+) | 1023 | WP_009908859.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
| CR542_RS00245 (CR542_00245) | purN | 38031..38582 (+) | 552 | WP_009908860.1 | phosphoribosylglycinamide formyltransferase | - |
| CR542_RS00250 (CR542_00250) | purH | 38592..40139 (+) | 1548 | WP_002935323.1 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| CR542_RS00255 (CR542_00255) | - | 40204..41034 (+) | 831 | WP_002935322.1 | DNA adenine methylase | - |
| CR542_RS00260 (CR542_00260) | - | 41024..41839 (+) | 816 | WP_032499218.1 | DNA-methyltransferase | - |
| CR542_RS00265 (CR542_00265) | - | 41817..42743 (+) | 927 | WP_002935320.1 | type II restriction endonuclease | - |
| CR542_RS00270 (CR542_00270) | - | 42743..43648 (+) | 906 | WP_002935319.1 | type II restriction endonuclease | - |
| CR542_RS00275 (CR542_00275) | purD | 43769..45031 (+) | 1263 | WP_002935318.1 | phosphoribosylamine--glycine ligase | - |
| CR542_RS00280 (CR542_00280) | purE | 45057..45545 (+) | 489 | WP_009908864.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| CR542_RS00285 (CR542_00285) | purK | 45532..46617 (+) | 1086 | WP_002935314.1 | 5-(carboxyamino)imidazole ribonucleotide synthase | - |
| CR542_RS00290 (CR542_00290) | - | 46604..47527 (+) | 924 | WP_002935313.1 | DUF4268 domain-containing protein | - |
| CR542_RS00295 (CR542_00295) | purB | 47562..48854 (+) | 1293 | WP_013730055.1 | adenylosuccinate lyase | - |
| CR542_RS00300 (CR542_00300) | - | 49366..50190 (+) | 825 | WP_002935311.1 | ABC transporter ATP-binding protein | - |
| CR542_RS00305 (CR542_00305) | - | 50183..50917 (+) | 735 | WP_002935310.1 | ABC transporter permease | - |
| CR542_RS00310 (CR542_00310) | - | 51252..51980 (+) | 729 | WP_002935309.1 | DUF2705 family protein | - |
| CR542_RS00315 (CR542_00315) | - | 51990..52568 (+) | 579 | WP_002935308.1 | CPBP family intramembrane glutamic endopeptidase | - |
| CR542_RS00320 (CR542_00320) | - | 52583..53011 (+) | 429 | WP_002935307.1 | Msa family membrane protein | - |
| CR542_RS00325 (CR542_00325) | - | 53004..53876 (+) | 873 | WP_002935305.1 | ABC transporter ATP-binding protein | - |
| CR542_RS00330 (CR542_00330) | - | 53882..54652 (+) | 771 | WP_002935304.1 | membrane protein | - |
| CR542_RS00335 (CR542_00335) | - | 54655..56367 (+) | 1713 | WP_002935303.1 | ABC transporter ATP-binding protein | - |
| CR542_RS11615 | - | 56469..56642 (+) | 174 | WP_002935301.1 | hypothetical protein | - |
| CR542_RS00340 (CR542_00340) | ruvB | 56937..57938 (+) | 1002 | WP_002935300.1 | Holliday junction branch migration DNA helicase RuvB | - |
| CR542_RS00345 (CR542_00345) | - | 57938..58684 (+) | 747 | WP_002935299.1 | GNAT family N-acetyltransferase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 19072.97 Da Isoelectric Point: 8.9339
>NTDB_id=252361 CR542_RS00080 WP_002936602.1 16137..16607(+) (comX/sigX) [Streptococcus suis strain HA0609]
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKR
KFDRMPHEDIHELSHAIQSPGLINDELLMLRGALRDYRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKR
KFDRMPHEDIHELSHAIQSPGLINDELLMLRGALRDYRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR
Nucleotide
Download Length: 471 bp
>NTDB_id=252361 CR542_RS00080 WP_002936602.1 16137..16607(+) (comX/sigX) [Streptococcus suis strain HA0609]
ATGGAATTCGAAAAAGTGTACGCAAGCGTCAAAGGTATTGTAAATAAGGCTCGAAAAGAGTTTTACATTAAACTATGGGA
TCGAGATGATTGGGAACAAGAAGGAATGATGACCTTGTTTGAATTGTTGGAAGCTCAACCGTGGCTAGTTGATGAACAAG
TTCAATTATATTGTTATTTTAAAGTCAAGTTCAGAAATCGAATCAAGGATCGTATCCGCAAACAGGAAAGTCAAAAACGC
AAGTTTGACCGTATGCCACATGAAGATATTCACGAATTATCTCACGCAATACAATCACCGGGATTAATAAACGATGAACT
ATTAATGCTAAGAGGTGCCTTGAGAGATTATCGAAAAAATCTGAGTAATGATCAACTTGATAAATACGAAAAATTAATTA
GCGGACAATGTTTTAATGGTCGCCGTGAAATGATACGTGATTTACAAATTCATTTGAAAGACTTTCGCTAA
ATGGAATTCGAAAAAGTGTACGCAAGCGTCAAAGGTATTGTAAATAAGGCTCGAAAAGAGTTTTACATTAAACTATGGGA
TCGAGATGATTGGGAACAAGAAGGAATGATGACCTTGTTTGAATTGTTGGAAGCTCAACCGTGGCTAGTTGATGAACAAG
TTCAATTATATTGTTATTTTAAAGTCAAGTTCAGAAATCGAATCAAGGATCGTATCCGCAAACAGGAAAGTCAAAAACGC
AAGTTTGACCGTATGCCACATGAAGATATTCACGAATTATCTCACGCAATACAATCACCGGGATTAATAAACGATGAACT
ATTAATGCTAAGAGGTGCCTTGAGAGATTATCGAAAAAATCTGAGTAATGATCAACTTGATAAATACGAAAAATTAATTA
GCGGACAATGTTTTAATGGTCGCCGTGAAATGATACGTGATTTACAAATTCATTTGAAAGACTTTCGCTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.