Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/comX2   Type   Regulator
Locus tag   CO686_RS00125 Genome accession   NZ_CP023507
Coordinates   22859..23332 (+) Length   157 a.a.
NCBI ID   WP_001049306.1    Uniprot ID   A0AAW7WA36
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 17859..28332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS00100 (CO686_00100) - 18596..19471 (-) 876 WP_080979120.1 RluA family pseudouridine synthase -
  CO686_RS00105 (CO686_00105) pbp2a 19558..21753 (+) 2196 WP_049550036.1 penicillin-binding protein PBP2A -
  CO686_RS00110 (CO686_00110) rpmG 21806..21958 (+) 153 WP_042899468.1 50S ribosomal protein L33 -
  CO686_RS00115 (CO686_00115) secE 21968..22144 (+) 177 WP_000505776.1 preprotein translocase subunit SecE -
  CO686_RS00120 (CO686_00120) nusG 22202..22738 (+) 537 WP_000376728.1 transcription termination/antitermination protein NusG -
  CO686_RS00125 (CO686_00125) comX/comX2 22859..23332 (+) 474 WP_001049306.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19325.14 Da        Isoelectric Point: 7.8480

>NTDB_id=247834 CO686_RS00125 WP_001049306.1 22859..23332(+) (comX/comX2) [Streptococcus oralis strain FDAARGOS_367]
MNLKDLYEESKGIVHKCRKDYHLHLWEKEDWDQEGMLCLYELVSRNPELLEGDRHQLYVCFKTKFRNRILDYIRKQESHK
RRFDKEPYEEVSEISHRLGEKGLRLDDYYLFHELLKNYKSKQSMEKQELIDRLMGGEVFRGRKALLRELSFIFSEFR

Nucleotide


Download         Length: 474 bp        

>NTDB_id=247834 CO686_RS00125 WP_001049306.1 22859..23332(+) (comX/comX2) [Streptococcus oralis strain FDAARGOS_367]
ATGAATCTAAAAGATTTATATGAAGAAAGTAAGGGAATCGTCCATAAGTGTCGCAAAGATTATCATTTGCATCTGTGGGA
GAAAGAGGACTGGGATCAGGAAGGCATGTTATGTCTGTATGAGCTGGTGAGTCGCAACCCAGAGTTACTAGAGGGCGACC
GCCATCAACTATATGTTTGCTTTAAAACAAAGTTTAGAAATCGCATCCTAGATTACATCCGTAAACAGGAAAGCCACAAG
CGCCGTTTTGACAAAGAACCCTATGAAGAGGTGAGTGAGATTAGCCATCGTCTAGGAGAAAAAGGACTCAGACTGGACGA
TTATTATCTCTTTCACGAACTTCTAAAGAATTATAAATCAAAGCAGAGTATGGAAAAACAAGAGTTAATAGATCGTCTCA
TGGGAGGGGAAGTCTTTAGAGGACGTAAAGCTCTCCTGAGAGAACTTTCCTTTATCTTTTCAGAATTTCGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/comX2 Streptococcus pneumoniae Rx1

64.935

98.089

0.637
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

64.935

98.089

0.637
  comX/comX2 Streptococcus pneumoniae D39

64.935

98.089

0.637
  comX/comX1 Streptococcus pneumoniae D39

64.935

98.089

0.637
  comX/comX2 Streptococcus pneumoniae R6

64.935

98.089

0.637
  comX/comX1 Streptococcus pneumoniae R6

64.935

98.089

0.637
  comX/comX1 Streptococcus pneumoniae Rx1

64.935

98.089

0.637
  comX/comX1 Streptococcus pneumoniae TIGR4

64.286

98.089

0.631
  comX/comX2 Streptococcus pneumoniae TIGR4

64.286

98.089

0.631
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

63.636

98.089

0.624
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

63.636

98.089

0.624
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

63.636

98.089

0.624
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

53.846

99.363

0.535
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

53.846

99.363

0.535
  comX/sigX Streptococcus mutans UA159

47.368

96.815

0.459
  comX/sigX Streptococcus suis D9

40.764

100

0.408
  comX/sigX Streptococcus suis isolate S10

40.764

100

0.408
  comX/sigX Streptococcus suis P1/7

40.764

100

0.408
  comX/sigX Streptococcus salivarius strain HSISS4

41.333

95.541

0.395
  comX Streptococcus thermophilus LMG 18311

41.333

95.541

0.395
  comX Streptococcus thermophilus LMD-9

41.333

95.541

0.395
  comX Streptococcus salivarius SK126

41.333

95.541

0.395
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

39.103

99.363

0.389
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

39.103

99.363

0.389
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

39.103

99.363

0.389
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

39.103

99.363

0.389
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

39.103

99.363

0.389
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

39.103

99.363

0.389
  comX Streptococcus sobrinus strain NIDR 6715-7

42.657

91.083

0.389
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

36.076

100

0.363

Multiple sequence alignment