Detailed information NTG0241550

Bioinformatically predicted

Overview

• Name: comX/sigX
• Type: Regulator
• Locus tag: CHF41_RS02545
• Genome accession: NZ_CP022680
• Coordinates: 505770..506246 (+)
• Length: 158 a.a.
• NCBI ID: WP_119875857.1
• Uniprot ID: -
• Organism: Streptococcus respiraculi strain HTS25
• Function: activate transcription of late competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	506453..507406	505770..506246	flank	207

Gene organization within MGE regions

Location: 505770..507406

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CHF41_RS02545	comX/sigX	505770..506246 (+)	477	WP_119875857.1	sigma-70 family RNA polymerase sigma factor	Regulator
CHF41_RS02550	-	506453..507406 (+)	954	WP_119875858.1	IS30 family transposase	-

Sequence

Protein

• Length: 158 a.a.
• Molecular weight: 19030.82 Da
• Isoelectric Point: 9.8614

>NTDB_id=241550 CHF41_RS02545 WP_119875857.1 505770..506246(+) (comX/sigX) [Streptococcus respiraculi strain HTS25]
MEFKEVYAKVRPIVQKTRREYYVKLWESEDWDQEGMYVLYRLLQQEEGLVKDESRLLRYFKVKFRNYVNDILRRQSTQKR
GFDRLRYEEIGEISHMISSGGLVTDELVCLRDSLARYRATLSPHDSKKYDTLVSGARFKGRKKLLRSLRQHLISEDEI

Nucleotide

• Length: 477 bp

>NTDB_id=241550 CHF41_RS02545 WP_119875857.1 505770..506246(+) (comX/sigX) [Streptococcus respiraculi strain HTS25]
GTGGAGTTTAAAGAAGTATATGCCAAGGTACGACCGATTGTTCAAAAGACGCGGCGGGAATACTATGTCAAACTATGGGA
ATCGGAAGATTGGGATCAAGAAGGGATGTATGTCTTATATCGCCTGCTTCAGCAAGAAGAGGGGCTAGTCAAAGATGAGT
CCCGCTTGCTTCGTTATTTCAAGGTCAAATTCCGTAATTATGTCAACGATATATTGCGCAGACAAAGTACGCAAAAACGT
GGCTTTGACCGGCTTCGTTACGAGGAGATAGGAGAAATATCTCATATGATTAGCAGTGGTGGTCTTGTCACGGATGAATT
AGTATGTCTTCGTGATTCACTAGCGCGTTATCGTGCTACACTAAGTCCACATGATTCAAAAAAGTATGATACGCTCGTCA
GTGGTGCTCGCTTCAAAGGTCGAAAGAAGCTGTTGCGCTCCCTTCGCCAACACCTCATAAGCGAAGATGAGATATAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comX/sigX	Streptococcus suis isolate S10	50	96.203	0.481
comX/sigX	Streptococcus suis P1/7	50	96.203	0.481
comX/sigX	Streptococcus suis D9	50	96.203	0.481
comR/comR2	Streptococcus gordonii str. Challis substr. CH1	48.684	96.203	0.468
comR/comR1	Streptococcus gordonii str. Challis substr. CH1	48.684	96.203	0.468
comX/comX2	Streptococcus pneumoniae R6	48.63	92.405	0.449
comX/comX1	Streptococcus pneumoniae D39	48.63	92.405	0.449
comX/comX1	Streptococcus pneumoniae R6	48.63	92.405	0.449
comX/comX2	Streptococcus pneumoniae Rx1	48.63	92.405	0.449
comX/comX1	Streptococcus pneumoniae Rx1	48.63	92.405	0.449
comX/comX2	Streptococcus pneumoniae D39	48.63	92.405	0.449
comX/sigX/comX2/sigX2	Streptococcus mitis NCTC 12261	48.299	93.038	0.449
comX/sigX	Streptococcus mutans UA159	46.358	95.57	0.443
comX/sigX/comX1/sigX1	Streptococcus mitis NCTC 12261	47.619	93.038	0.443
comX/sigX/comX1/sigX1	Streptococcus mitis SK321	47.619	93.038	0.443
comX/sigX/comX2/sigX2	Streptococcus mitis SK321	47.619	93.038	0.443
comX/comX2	Streptococcus pneumoniae TIGR4	47.945	92.405	0.443
comX/comX1	Streptococcus pneumoniae TIGR4	47.945	92.405	0.443
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS315	44.595	93.671	0.418
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS315	44.595	93.671	0.418
comX	Streptococcus thermophilus LMD-9	42.857	97.468	0.418
comX	Streptococcus thermophilus LMG 18311	42.857	97.468	0.418
comX/sigX/comX1/sigX1	Streptococcus pyogenes JRS4	43.919	93.671	0.411
comX/sigX/comX2/sigX2	Streptococcus pyogenes JRS4	43.919	93.671	0.411
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS8232	43.919	93.671	0.411
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS8232	43.919	93.671	0.411
comX/sigX	Streptococcus infantarius subsp. infantarius ATCC BAA-102	42.282	94.304	0.399
comX	Streptococcus sobrinus strain NIDR 6715-7	40	98.101	0.392
comX/sigX	Streptococcus salivarius strain HSISS4	39.61	97.468	0.386
comX	Streptococcus salivarius SK126	39.61	97.468	0.386