Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   CCZ24_RS10080 Genome accession   NZ_CP021773
Coordinates   1979866..1980345 (-) Length   159 a.a.
NCBI ID   WP_001204193.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain B105     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1974866..1985345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ24_RS10055 (CCZ24_09915) grpE 1975979..1976551 (-) 573 WP_001869793.1 nucleotide exchange factor GrpE -
  CCZ24_RS10060 (CCZ24_09920) hrcA 1976554..1977588 (-) 1035 WP_001873813.1 heat-inducible transcriptional repressor HrcA -
  CCZ24_RS10065 (CCZ24_09925) - 1977731..1978306 (-) 576 WP_001231504.1 glucosaminidase domain-containing protein -
  CCZ24_RS10070 (CCZ24_09930) - 1978303..1979055 (-) 753 WP_000739666.1 M15 family metallopeptidase -
  CCZ24_RS10075 (CCZ24_09935) - 1979052..1979744 (-) 693 WP_000049277.1 histidine phosphatase family protein -
  CCZ24_RS10080 (CCZ24_09940) comX/sigX 1979866..1980345 (-) 480 WP_001204193.1 sigma-70 family RNA polymerase sigma factor Regulator
  CCZ24_RS10085 (CCZ24_09945) - 1980545..1980964 (-) 420 WP_000784700.1 YjdF family protein -
  CCZ24_RS10090 (CCZ24_09950) - 1981184..1981735 (-) 552 WP_000161849.1 nucleotidyltransferase family protein -
  CCZ24_RS10095 (CCZ24_09955) - 1982525..1982869 (-) 345 WP_000073534.1 hypothetical protein -
  CCZ24_RS10100 (CCZ24_09960) - 1982862..1983302 (-) 441 WP_000716196.1 hypothetical protein -
  CCZ24_RS10105 (CCZ24_09965) - 1983453..1983656 (-) 204 WP_000840976.1 hypothetical protein -
  CCZ24_RS12115 - 1983726..1984157 (-) 432 WP_000761051.1 hypothetical protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19473.36 Da        Isoelectric Point: 7.2741

>NTDB_id=233372 CCZ24_RS10080 WP_001204193.1 1979866..1980345(-) (comX/sigX) [Streptococcus agalactiae strain B105]
MRDFEELFDKVKPIVMKLRRNYFVQLWEYDDWIQEGRIVLFRLLEEHPYLLDNESKLFIYFKTKFSNYLNDVLRHQDCQK
RQFNKMPYEEISEVSHYVKSKGLVLDDYIAYRDTLTKVEETLSDIDKEKFEKLINGERFAGKKKFIRNIQPFFNAFKAD

Nucleotide


Download         Length: 480 bp        

>NTDB_id=233372 CCZ24_RS10080 WP_001204193.1 1979866..1980345(-) (comX/sigX) [Streptococcus agalactiae strain B105]
TTGAGAGATTTTGAGGAGTTGTTTGATAAAGTAAAGCCAATCGTAATGAAGCTGAGAAGAAATTATTTTGTTCAACTTTG
GGAATATGATGATTGGATTCAAGAAGGACGTATTGTACTTTTTAGGTTGCTTGAAGAGCATCCGTATTTATTGGATAATG
AAAGCAAACTATTCATTTACTTTAAAACAAAATTTTCAAATTATTTAAACGATGTATTAAGACACCAAGATTGTCAAAAG
CGACAATTTAATAAAATGCCTTATGAAGAAATCAGTGAAGTTAGTCATTATGTTAAGAGTAAAGGACTAGTTTTAGATGA
CTATATTGCTTATCGTGATACTTTAACAAAAGTGGAAGAAACTTTGTCAGATATTGATAAAGAAAAATTTGAAAAACTGA
TTAATGGTGAACGTTTTGCGGGGAAGAAAAAATTCATACGAAATATTCAACCTTTTTTCAATGCTTTTAAAGCGGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

56.688

98.742

0.56
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

52.349

93.711

0.491
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

52.349

93.711

0.491
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

52.349

93.711

0.491
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

52.349

93.711

0.491
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

52

94.34

0.491
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

52

94.34

0.491
  comX/sigX Streptococcus mutans UA159

49.032

97.484

0.478
  comX Streptococcus sobrinus strain NIDR 6715-7

42.949

98.113

0.421
  comX/sigX Streptococcus suis isolate S10

41.935

97.484

0.409
  comX/sigX Streptococcus suis P1/7

41.935

97.484

0.409
  comX/sigX Streptococcus suis D9

41.935

97.484

0.409
  comX Streptococcus thermophilus LMD-9

42.857

92.453

0.396
  comX Streptococcus thermophilus LMG 18311

42.857

92.453

0.396
  comX/sigX Streptococcus salivarius strain HSISS4

41.497

92.453

0.384
  comX Streptococcus salivarius SK126

41.497

92.453

0.384
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

39.216

96.226

0.377
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

39.216

96.226

0.377
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

39.216

96.226

0.377
  comX/comX1 Streptococcus pneumoniae D39

39.073

94.969

0.371
  comX/comX2 Streptococcus pneumoniae R6

39.073

94.969

0.371
  comX/comX1 Streptococcus pneumoniae R6

39.073

94.969

0.371
  comX/comX2 Streptococcus pneumoniae TIGR4

39.073

94.969

0.371
  comX/comX2 Streptococcus pneumoniae Rx1

39.073

94.969

0.371
  comX/comX1 Streptococcus pneumoniae Rx1

39.073

94.969

0.371
  comX/comX2 Streptococcus pneumoniae D39

39.073

94.969

0.371
  comX/comX1 Streptococcus pneumoniae TIGR4

39.073

94.969

0.371
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

38.562

96.226

0.371
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

38.562

96.226

0.371
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

37.908

96.226

0.365

Multiple sequence alignment