Detailed information NTG0194000

Bioinformatically predicted

Overview

• Name: comR/comR2
• Type: Regulator
• Locus tag: BFM96_RS02880
• Genome accession: NZ_CP016953
• Coordinates: 579632..580102 (-)
• Length: 156 a.a.
• NCBI ID: WP_223245866.1
• Uniprot ID: A0A917ABN7
• Organism: Streptococcus himalayensis strain HTS2
• Function: activate transcription of late competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	580824..581933	579632..580102	flank	722

Gene organization within MGE regions

Location: 579632..581933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFM96_RS02880	comR/comR2	579632..580102 (-)	471	WP_223245866.1	sigma-70 family RNA polymerase sigma factor	Regulator
BFM96_RS02890	-	580676..581933 (+)	1258	WP_145939703.1	ISL3 family transposase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 19146.83 Da
• Isoelectric Point: 6.4975

>NTDB_id=194000 BFM96_RS02880 WP_223245866.1 579632..580102(-) (comR/comR2) [Streptococcus himalayensis strain HTS2]
MMEQFEAMYAKVRGIVLRCRKDYYVQLWEQEDWEQEGMLVLYQLLKQYPELGEEKLYVYYKTKFRNHVLDVIRKQESQKR
KLNRMAYEEVSEIGHKLTQGGLLPDDQYLLQAELTRYRSSLSQASQERYDRLIADERFKGRRELLRELREYLSDWE

Nucleotide

• Length: 471 bp

>NTDB_id=194000 BFM96_RS02880 WP_223245866.1 579632..580102(-) (comR/comR2) [Streptococcus himalayensis strain HTS2]
ATGATGGAACAGTTTGAAGCTATGTATGCCAAAGTCAGAGGAATAGTCCTACGATGCCGAAAAGACTACTATGTCCAGTT
GTGGGAACAAGAAGATTGGGAACAAGAAGGGATGCTCGTGTTGTATCAATTACTCAAGCAATACCCTGAGTTAGGGGAAG
AGAAATTGTATGTTTACTATAAAACAAAGTTTCGCAACCATGTGCTAGATGTTATCCGCAAACAAGAAAGCCAAAAACGA
AAATTAAACAGAATGGCCTATGAAGAAGTAAGCGAGATAGGACATAAGTTAACCCAAGGAGGATTACTACCAGATGATCA
GTATCTATTACAGGCAGAGTTGACTCGGTATCGCTCCAGCCTCAGTCAAGCCTCTCAAGAAAGATACGATCGCCTCATAG
CCGATGAACGCTTCAAGGGGCGCCGGGAACTCCTACGAGAGTTACGGGAGTACCTATCGGATTGGGAGTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comR/comR1	Streptococcus gordonii str. Challis substr. CH1	55.195	98.718	0.545
comR/comR2	Streptococcus gordonii str. Challis substr. CH1	55.195	98.718	0.545
comX/sigX	Streptococcus mutans UA159	49.045	100	0.494
comX/sigX/comX2/sigX2	Streptococcus mitis SK321	50.34	94.231	0.474
comX/sigX/comX1/sigX1	Streptococcus mitis SK321	48.98	94.231	0.462
comX/comX1	Streptococcus pneumoniae TIGR4	49.306	92.308	0.455
comX/comX2	Streptococcus pneumoniae TIGR4	49.306	92.308	0.455
comX/sigX	Streptococcus suis isolate S10	46.104	98.718	0.455
comX/sigX	Streptococcus suis D9	46.104	98.718	0.455
comX/sigX	Streptococcus suis P1/7	46.104	98.718	0.455
comX/sigX/comX2/sigX2	Streptococcus mitis NCTC 12261	48.299	94.231	0.455
comX/comX2	Streptococcus pneumoniae R6	48.611	92.308	0.449
comX/comX2	Streptococcus pneumoniae Rx1	48.611	92.308	0.449
comX/comX1	Streptococcus pneumoniae Rx1	48.611	92.308	0.449
comX/comX2	Streptococcus pneumoniae D39	48.611	92.308	0.449
comX/comX1	Streptococcus pneumoniae D39	48.611	92.308	0.449
comX/comX1	Streptococcus pneumoniae R6	48.611	92.308	0.449
comX/sigX/comX1/sigX1	Streptococcus mitis NCTC 12261	46.259	94.231	0.436
comX/sigX	Streptococcus salivarius strain HSISS4	42.949	100	0.429
comX	Streptococcus thermophilus LMG 18311	42.949	100	0.429
comX	Streptococcus thermophilus LMD-9	42.949	100	0.429
comX	Streptococcus salivarius SK126	42.308	100	0.423
comX/sigX	Streptococcus infantarius subsp. infantarius ATCC BAA-102	42.857	98.718	0.423
comX/sigX/comX1/sigX1	Streptococcus pyogenes JRS4	43.046	96.795	0.417
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS315	43.046	96.795	0.417
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS315	43.046	96.795	0.417
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS8232	43.046	96.795	0.417
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS8232	43.046	96.795	0.417
comX/sigX/comX2/sigX2	Streptococcus pyogenes JRS4	43.046	96.795	0.417
comX	Streptococcus sobrinus strain NIDR 6715-7	38.608	100	0.391