Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   BFM96_RS00320 Genome accession   NZ_CP016953
Coordinates   78297..78767 (-) Length   156 a.a.
NCBI ID   WP_373283974.1    Uniprot ID   A0A917AAU7
Organism   Streptococcus himalayensis strain HTS2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 73297..83767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS11175 - 78129..78269 (-) 141 WP_188595324.1 hypothetical protein -
  BFM96_RS00320 comR/comR2 78297..78767 (-) 471 WP_373283974.1 sigma-70 family RNA polymerase sigma factor Regulator
  BFM96_RS00325 - 79146..79346 (-) 201 Protein_50 transposase domain-containing protein -
  BFM96_RS00330 yidD 79981..80220 (-) 240 WP_068988909.1 membrane protein insertion efficiency factor YidD -
  BFM96_RS00335 - 80217..80942 (-) 726 WP_068988911.1 pseudouridine synthase -
  BFM96_RS00340 scpB 80929..81498 (-) 570 WP_068988913.1 SMC-Scp complex subunit ScpB -
  BFM96_RS00345 - 81491..82201 (-) 711 WP_068988916.1 segregation/condensation protein A -
  BFM96_RS00350 xerD 82201..82932 (-) 732 WP_068988918.1 site-specific tyrosine recombinase XerD -
  BFM96_RS00355 cbpB 82929..83390 (-) 462 WP_068988921.1 cyclic-di-AMP-binding protein CbpB -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 19106.77 Da        Isoelectric Point: 6.7310

>NTDB_id=193989 BFM96_RS00320 WP_373283974.1 78297..78767(-) (comR/comR2) [Streptococcus himalayensis strain HTS2]
MMDQFEAMYAKVRGIVLRCRKDYYVQLWEQEDWEQEGMLVLYQLLKQHPELGEEKLYVYYKTKFRNHVLDVIRKQESQKR
KLNRMAYEEVSEIGHKLTQGGLLPDDQYLLQAELTRYRSSLSQASQERYDRLIADERFKGRRELLRELREYLSDWE

Nucleotide


Download         Length: 471 bp        

>NTDB_id=193989 BFM96_RS00320 WP_373283974.1 78297..78767(-) (comR/comR2) [Streptococcus himalayensis strain HTS2]
ATGATGGATCAGTTTGAAGCTATGTATGCCAAAGTCAGAGGAATAGTCCTACGATGCCGAAAAGACTACTATGTCCAGTT
GTGGGAACAAGAAGATTGGGAACAAGAAGGGATGCTCGTGTTGTATCAGTTACTCAAGCAACATCCTGAGTTAGGGGAAG
AGAAATTGTATGTCTACTATAAAACAAAGTTTCGCAACCACGTGCTAGATGTTATCCGCAAACAAGAAAGCCAAAAACGA
AAATTAAACAGAATGGCCTATGAAGAAGTAAGCGAGATAGGACATAAGTTAACCCAAGGAGGGTTACTACCAGATGATCA
GTATCTATTACAGGCAGAGTTGACTCGGTATCGCTCCAGCCTCAGTCAAGCCTCACAAGAAAGATACGATCGCCTCATAG
CCGATGAACGCTTCAAGGGGCGCCGGGAACTCCTACGAGAGTTACGAGAGTACCTATCGGATTGGGAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

55.844

98.718

0.551
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

55.844

98.718

0.551
  comX/sigX Streptococcus mutans UA159

49.045

100

0.494
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

50.34

94.231

0.474
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

48.98

94.231

0.462
  comX/comX2 Streptococcus pneumoniae TIGR4

49.306

92.308

0.455
  comX/comX1 Streptococcus pneumoniae TIGR4

49.306

92.308

0.455
  comX/sigX Streptococcus suis P1/7

46.104

98.718

0.455
  comX/sigX Streptococcus suis isolate S10

46.104

98.718

0.455
  comX/sigX Streptococcus suis D9

46.104

98.718

0.455
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

48.299

94.231

0.455
  comX/comX2 Streptococcus pneumoniae R6

48.611

92.308

0.449
  comX/comX2 Streptococcus pneumoniae Rx1

48.611

92.308

0.449
  comX/comX1 Streptococcus pneumoniae Rx1

48.611

92.308

0.449
  comX/comX2 Streptococcus pneumoniae D39

48.611

92.308

0.449
  comX/comX1 Streptococcus pneumoniae D39

48.611

92.308

0.449
  comX/comX1 Streptococcus pneumoniae R6

48.611

92.308

0.449
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

46.259

94.231

0.436
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

43.506

98.718

0.429
  comX/sigX Streptococcus salivarius strain HSISS4

42.857

98.718

0.423
  comX Streptococcus thermophilus LMG 18311

42.857

98.718

0.423
  comX Streptococcus thermophilus LMD-9

42.857

98.718

0.423
  comX Streptococcus salivarius SK126

42.208

98.718

0.417
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.384

96.795

0.41
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.384

96.795

0.41
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.384

96.795

0.41
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.384

96.795

0.41
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.384

96.795

0.41
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.384

96.795

0.41
  comX Streptococcus sobrinus strain NIDR 6715-7

38.608

100

0.391

Multiple sequence alignment