Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A4202_RS07915 | Genome accession | NZ_CP015570 |
| Coordinates | 1712540..1712992 (-) | Length | 150 a.a. |
| NCBI ID | WP_012340854.1 | Uniprot ID | W0R5B1 |
| Organism | Pasteurella multocida strain USDA-ARS-USMARC-59962 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1695982..1712004 | 1712540..1712992 | flank | 536 |
Gene organization within MGE regions
Location: 1695982..1712992
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4202_RS07810 (A4202_07740) | - | 1695982..1696692 (+) | 711 | WP_006248874.1 | hypothetical protein | - |
| A4202_RS07815 (A4202_07745) | - | 1697231..1697998 (-) | 768 | WP_012340839.1 | aldo/keto reductase | - |
| A4202_RS07820 (A4202_07750) | - | 1697949..1698317 (+) | 369 | WP_308700758.1 | DUF6803 family protein | - |
| A4202_RS07830 (A4202_07755) | - | 1698499..1698954 (+) | 456 | WP_005612095.1 | DUF411 domain-containing protein | - |
| A4202_RS07835 (A4202_07760) | - | 1698967..1700514 (+) | 1548 | WP_006248871.1 | multicopper oxidase family protein | - |
| A4202_RS07840 (A4202_07765) | - | 1700604..1700738 (-) | 135 | WP_015587091.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| A4202_RS07850 (A4202_07775) | - | 1701076..1701594 (+) | 519 | WP_006248869.1 | hypothetical protein | - |
| A4202_RS07855 (A4202_07780) | tetR(H) | 1701597..1702220 (-) | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| A4202_RS07860 (A4202_07785) | tet(H) | 1702312..1703514 (+) | 1203 | WP_006248867.1 | tetracycline efflux MFS transporter Tet(H) | - |
| A4202_RS07870 (A4202_07790) | - | 1703901..1705178 (-) | 1278 | WP_011872831.1 | ISL3 family transposase | - |
| A4202_RS07875 (A4202_07795) | - | 1705191..1706225 (-) | 1035 | WP_021265566.1 | permease | - |
| A4202_RS07880 (A4202_07800) | - | 1706337..1706651 (+) | 315 | WP_000349485.1 | ArsR/SmtB family transcription factor | - |
| A4202_RS07885 (A4202_07805) | - | 1706886..1707674 (+) | 789 | WP_031192893.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA31 | - |
| A4202_RS11050 | - | 1708294..1708509 (+) | 216 | WP_021265564.1 | hypothetical protein | - |
| A4202_RS11235 | - | 1708544..1708747 (+) | 204 | WP_199764664.1 | N-6 DNA methylase | - |
| A4202_RS11060 | - | 1708665..1708952 (-) | 288 | WP_143432442.1 | plasmid fertility inhibition factor family protein | - |
| A4202_RS07895 (A4202_07815) | tet(H) | 1709094..1710296 (+) | 1203 | Protein_1532 | tetracycline efflux MFS transporter Tet(H) | - |
| A4202_RS07900 (A4202_07820) | - | 1710392..1711702 (-) | 1311 | WP_011200814.1 | ISL3 family transposase | - |
| A4202_RS07905 (A4202_07825) | - | 1711702..1711938 (-) | 237 | WP_230294061.1 | hypothetical protein | - |
| A4202_RS07910 (A4202_07830) | - | 1712045..1712233 (-) | 189 | WP_011200812.1 | hypothetical protein | - |
| A4202_RS07915 (A4202_07835) | ssb | 1712540..1712992 (-) | 453 | WP_012340854.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17204.13 Da Isoelectric Point: 5.2733
>NTDB_id=180982 A4202_RS07915 WP_012340854.1 1712540..1712992(-) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-59962]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=180982 A4202_RS07915 WP_012340854.1 1712540..1712992(-) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-59962]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
63.333 |
100 |
0.76 |
| ssb | Vibrio cholerae strain A1552 |
51.724 |
100 |
0.6 |
| ssb | Neisseria gonorrhoeae MS11 |
45.665 |
100 |
0.527 |
| ssb | Neisseria meningitidis MC58 |
45.087 |
100 |
0.52 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
31.818 |
100 |
0.373 |