Detailed information NTG0177435

Bioinformatically predicted

Overview

• Name: comX/sigX
• Type: Regulator
• Locus tag: A4H00_RS04400
• Genome accession: NZ_CP015196
• Coordinates: 859101..859565 (+)
• Length: 154 a.a.
• NCBI ID: WP_067086464.1
• Uniprot ID: -
• Organism: Streptococcus marmotae strain HTS5
• Function: activate transcription of late competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	858539..858976	859101..859565	flank	125

Gene organization within MGE regions

Location: 858539..859565

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4H00_RS04400	comX/sigX	859101..859565 (+)	465	WP_067086464.1	transcriptional regulator	Regulator

Sequence

Protein

• Length: 154 a.a.
• Molecular weight: 18746.53 Da
• Isoelectric Point: 9.0961

>NTDB_id=177435 A4H00_RS04400 WP_067086464.1 859101..859565(+) (comX/sigX) [Streptococcus marmotae strain HTS5]
MDFKRLYLQVRPIVVKARKEYYIKSWEVSDWDQEGMYILYCLLEREAGIEEDPSRLYRYYKVKFRNYIKDIIRKQESQKR
KFDRMSYEEIGEVSHKLGSGGLVTDELICLRDRLSSYRSQLSEEEVGQYELLISGRNFKGRRKMLRELRVYLED

Nucleotide

• Length: 465 bp

>NTDB_id=177435 A4H00_RS04400 WP_067086464.1 859101..859565(+) (comX/sigX) [Streptococcus marmotae strain HTS5]
ATGGACTTTAAGAGACTCTATTTACAAGTACGCCCGATAGTAGTGAAAGCCCGGAAGGAATACTATATTAAGAGCTGGGA
GGTCAGCGACTGGGATCAAGAAGGGATGTATATATTGTATTGCTTACTAGAGCGCGAGGCAGGGATAGAAGAGGACCCTA
GTCGCTTATATCGGTATTATAAAGTAAAATTCCGCAATTACATCAAAGACATCATTCGGAAACAAGAAAGCCAGAAACGG
AAGTTTGACCGGATGAGCTATGAGGAAATAGGAGAAGTATCGCATAAGCTAGGGAGCGGCGGCTTAGTTACAGATGAGTT
AATCTGTCTCCGCGACAGACTAAGTAGCTATCGTTCCCAACTAAGTGAAGAAGAAGTTGGCCAATATGAACTCCTCATAA
GCGGGAGGAACTTCAAAGGGCGTCGGAAGATGTTACGCGAGTTACGGGTCTATTTAGAAGATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comX/sigX	Streptococcus suis D9	54.545	100	0.545
comX/sigX	Streptococcus suis isolate S10	54.545	100	0.545
comX/sigX	Streptococcus suis P1/7	54.545	100	0.545
comR/comR2	Streptococcus gordonii str. Challis substr. CH1	51.299	100	0.513
comR/comR1	Streptococcus gordonii str. Challis substr. CH1	51.299	100	0.513
comX/sigX	Streptococcus mutans UA159	50.327	99.351	0.5
comX/sigX/comX1/sigX1	Streptococcus mitis SK321	50	96.104	0.481
comX/sigX/comX2/sigX2	Streptococcus mitis SK321	49.324	96.104	0.474
comX/sigX/comX1/sigX1	Streptococcus mitis NCTC 12261	47.368	98.701	0.468
comX/sigX/comX2/sigX2	Streptococcus mitis NCTC 12261	47.973	96.104	0.461
comX/comX1	Streptococcus pneumoniae Rx1	48.299	95.455	0.461
comX/comX2	Streptococcus pneumoniae D39	48.299	95.455	0.461
comX/comX1	Streptococcus pneumoniae D39	48.299	95.455	0.461
comX/comX2	Streptococcus pneumoniae R6	48.299	95.455	0.461
comX/comX1	Streptococcus pneumoniae R6	48.299	95.455	0.461
comX/comX2	Streptococcus pneumoniae Rx1	48.299	95.455	0.461
comX/comX2	Streptococcus pneumoniae TIGR4	47.619	95.455	0.455
comX/comX1	Streptococcus pneumoniae TIGR4	47.619	95.455	0.455
comX/sigX/comX2/sigX2	Streptococcus pyogenes JRS4	45.89	94.805	0.435
comX/sigX/comX1/sigX1	Streptococcus pyogenes JRS4	45.89	94.805	0.435
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS8232	45.89	94.805	0.435
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS8232	45.89	94.805	0.435
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS315	43.506	100	0.435
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS315	43.506	100	0.435
comX	Streptococcus sobrinus strain NIDR 6715-7	42.763	98.701	0.422
comX	Streptococcus thermophilus LMG 18311	39.474	98.701	0.39
comX	Streptococcus salivarius SK126	39.474	98.701	0.39
comX/sigX	Streptococcus salivarius strain HSISS4	39.474	98.701	0.39
comX	Streptococcus thermophilus LMD-9	39.474	98.701	0.39
comX/sigX	Streptococcus infantarius subsp. infantarius ATCC BAA-102	38.065	100	0.383