Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A9E88_RS12515 Genome accession   NZ_CP015946
Coordinates   2815738..2816421 (+) Length   227 a.a.
NCBI ID   WP_010948191.1    Uniprot ID   Q5ZSM8
Organism   Legionella pneumophila strain E1_P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2810738..2821421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9E88_RS12500 (A9E88_12500) - 2812591..2813979 (-) 1389 WP_010948188.1 phosphomannomutase/phosphoglucomutase -
  A9E88_RS12505 (A9E88_12505) dut 2813980..2814438 (-) 459 WP_014842515.1 dUTP diphosphatase -
  A9E88_RS12510 (A9E88_12510) coaBC 2814465..2815661 (-) 1197 WP_015444059.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A9E88_RS12515 (A9E88_12515) radC 2815738..2816421 (+) 684 WP_010948191.1 RadC family protein Machinery gene
  A9E88_RS12520 (A9E88_12520) - 2816457..2816693 (+) 237 WP_015444058.1 hypothetical protein -
  A9E88_RS12525 (A9E88_12525) lepB 2816773..2820657 (+) 3885 WP_010948192.1 Dot/Icm T4SS GTPase-activating effector LepB -
  A9E88_RS12530 (A9E88_12530) thpR 2820780..2821343 (-) 564 WP_010948193.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25749.42 Da        Isoelectric Point: 7.0185

>NTDB_id=157665 A9E88_RS12515 WP_010948191.1 2815738..2816421(+) (radC) [Legionella pneumophila strain E1_P]
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIHLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=157665 A9E88_RS12515 WP_010948191.1 2815738..2816421(+) (radC) [Legionella pneumophila strain E1_P]
ATGATGGTTGCCCATACAGCGCAGCAACTTGACTTGCGCGAAAAACTACTTACTAATGGAGTACATAGCCTCTCTGATAT
TGAATTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGTAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAGGTTCGTTATGCA
CAACTTCAGGCTGCGAAAGAAATATGTCATCGAAGTGATTTTATTCATCTGCAAAAAGAAATCCGGTTATCTAACACACA
ACAAACTTATGCTTTTTTAAAAAAACGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATTATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACGGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATTT
AGCCATTACAGAACGCATTCGAGATGCTCTGGATTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZSM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.119

96.035

0.414

Multiple sequence alignment