Detailed information    

insolico Bioinformatically predicted

Overview


Name   comR/comR2   Type   Regulator
Locus tag   SanJ4211_RS00070 Genome accession   NZ_CP012805
Coordinates   15247..15720 (+) Length   157 a.a.
NCBI ID   WP_021001138.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4211     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 10247..20720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS00055 (SanJ4211_0012) tilS 11094..12371 (+) 1278 WP_021001136.1 tRNA lysidine(34) synthetase TilS -
  SanJ4211_RS00060 (SanJ4211_0013) hpt 12377..12919 (+) 543 WP_021001137.1 hypoxanthine phosphoribosyltransferase -
  SanJ4211_RS00065 (SanJ4211_0014) ftsH 12940..14910 (+) 1971 WP_003026841.1 ATP-dependent zinc metalloprotease FtsH -
  SanJ4211_RS00070 (SanJ4211_0015) comR/comR2 15247..15720 (+) 474 WP_021001138.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence


Protein


Download         Length: 157 a.a.        Molecular weight: 19334.13 Da        Isoelectric Point: 7.3490

>NTDB_id=157665 SanJ4211_RS00070 WP_021001138.1 15247..15720(+) (comR/comR2) [Streptococcus anginosus strain J4211]
MEFKELYGKVRGIVLKCRRDYYVHLWELSDWEQEGMLVLYQLVSRYPQLVEEDHQLYVYYKTKFRNHILDILRKQESQKR
KLDRQAYEEVSEIGHKLNLKELYLDELVILRDQLKSYQAQLSSEKQEQYERLLADERFKGRQAMIRELRAYLKDYSD

Nucleotide


Download         Length: 474 bp        

>NTDB_id=157665 SanJ4211_RS00070 WP_021001138.1 15247..15720(+) (comR/comR2) [Streptococcus anginosus strain J4211]
ATGGAGTTCAAGGAGTTGTATGGCAAGGTAAGGGGGATTGTATTAAAGTGCCGTCGGGATTATTATGTTCACTTGTGGGA
ATTAAGCGATTGGGAACAAGAGGGCATGTTGGTGCTCTATCAGTTGGTGAGTCGCTATCCGCAGCTAGTAGAAGAAGATC
ATCAGCTCTATGTTTACTATAAGACCAAGTTCCGCAATCATATCCTGGACATCCTCCGTAAACAGGAAAGCCAAAAACGC
AAACTCGACCGTCAAGCTTATGAAGAAGTGAGCGAGATTGGTCACAAGCTCAATCTAAAAGAACTGTATCTGGATGAATT
GGTGATTCTCCGAGACCAGCTAAAGAGTTACCAAGCTCAACTGAGTTCAGAGAAACAAGAGCAGTATGAGCGCTTACTAG
CCGATGAACGGTTCAAAGGCCGCCAAGCTATGATTCGAGAATTAAGAGCCTACTTAAAGGACTATAGCGATTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599

  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599

  comX/comX2 Streptococcus pneumoniae TIGR4

53.247

98.089

0.522

  comX/comX1 Streptococcus pneumoniae TIGR4

53.247

98.089

0.522

  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

53.247

98.089

0.522

  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

53.247

98.089

0.522

  comX/comX2 Streptococcus pneumoniae D39

52.597

98.089

0.516

  comX/comX2 Streptococcus pneumoniae Rx1

52.597

98.089

0.516

  comX/comX1 Streptococcus pneumoniae Rx1

52.597

98.089

0.516

  comX/comX1 Streptococcus pneumoniae D39

52.597

98.089

0.516

  comX/comX2 Streptococcus pneumoniae R6

52.597

98.089

0.516

  comX/comX1 Streptococcus pneumoniae R6

52.597

98.089

0.516

  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

52.288

97.452

0.51

  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

51.948

98.089

0.51

  comX/sigX Streptococcus mutans UA159

48.718

99.363

0.484

  comX/sigX Streptococcus suis D9

47.742

98.726

0.471

  comX/sigX Streptococcus suis isolate S10

47.742

98.726

0.471

  comX/sigX Streptococcus suis P1/7

47.742

98.726

0.471

  comX Streptococcus salivarius SK126

46.405

97.452

0.452

  comX Streptococcus thermophilus LMG 18311

45.455

98.089

0.446

  comX Streptococcus thermophilus LMD-9

45.455

98.089

0.446

  comX/sigX Streptococcus salivarius strain HSISS4

45.752

97.452

0.446

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.949

99.363

0.427

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.949

99.363

0.427

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.949

99.363

0.427

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.949

99.363

0.427

  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.949

99.363

0.427

  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.949

99.363

0.427

  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

37.821

99.363

0.376

  comX Streptococcus sobrinus strain NIDR 6715-7

38.562

97.452

0.376


Multiple sequence alignment