Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | AKJ08_RS03375 | Genome accession | NZ_CP012332 |
| Coordinates | 833793..834881 (+) | Length | 362 a.a. |
| NCBI ID | WP_050724765.1 | Uniprot ID | - |
| Organism | Vulgatibacter incomptus strain DSM 27710 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 828793..839881
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKJ08_RS03360 (AKJ08_0683) | - | 829061..831001 (+) | 1941 | WP_240475425.1 | chloride channel protein | - |
| AKJ08_RS03365 (AKJ08_0684) | - | 831033..832004 (+) | 972 | WP_050724763.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| AKJ08_RS03370 (AKJ08_0685) | pilB | 832069..833772 (+) | 1704 | WP_050724764.1 | type IV-A pilus assembly ATPase PilB | - |
| AKJ08_RS03375 (AKJ08_0686) | pilT | 833793..834881 (+) | 1089 | WP_050724765.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| AKJ08_RS03380 (AKJ08_0687) | - | 834936..836198 (+) | 1263 | WP_050724766.1 | type II secretion system F family protein | - |
| AKJ08_RS03385 (AKJ08_0688) | - | 836308..837975 (+) | 1668 | WP_050724767.1 | two-component system sensor histidine kinase NtrB | - |
| AKJ08_RS03390 (AKJ08_0689) | pilR | 837978..839372 (+) | 1395 | WP_050724768.1 | sigma-54-dependent transcriptional regulator | Regulator |
Sequence
Protein
Download Length: 362 a.a. Molecular weight: 39891.04 Da Isoelectric Point: 9.3409
>NTDB_id=153560 AKJ08_RS03375 WP_050724765.1 833793..834881(+) (pilT) [Vulgatibacter incomptus strain DSM 27710]
MANLHQLLKQMVEKGASDLHITASSPPQLRIDGKLMPLKQAPLTPVETKQICYSVLTEAQKHKFEEENELDASFGVKGLS
RFRANVFLQRGAVAGAFRTIPFKVMSFADLGLPPIVSTLAEKPRGLVLVTGPTGSGKSTTLASIIDKINTERNAHIITIE
DPIEYLHPHKNSVVNQREVGADTDSFKKALKYILRQDPDVVLVGEMRDRETVEAALTIAETGHLCFATLHTNSAIQTINR
ILDIFPANQQSQVRAQLSFVLEGVVTQNLLPKAVGNGRVLAAEVMVPNPAIRNLIREDKLHQVYSQMQVGQAKFGMQTFN
QSLFGLLQKRLITVDEAMSRSSEPDELRNMLTGSAPARPMAR
MANLHQLLKQMVEKGASDLHITASSPPQLRIDGKLMPLKQAPLTPVETKQICYSVLTEAQKHKFEEENELDASFGVKGLS
RFRANVFLQRGAVAGAFRTIPFKVMSFADLGLPPIVSTLAEKPRGLVLVTGPTGSGKSTTLASIIDKINTERNAHIITIE
DPIEYLHPHKNSVVNQREVGADTDSFKKALKYILRQDPDVVLVGEMRDRETVEAALTIAETGHLCFATLHTNSAIQTINR
ILDIFPANQQSQVRAQLSFVLEGVVTQNLLPKAVGNGRVLAAEVMVPNPAIRNLIREDKLHQVYSQMQVGQAKFGMQTFN
QSLFGLLQKRLITVDEAMSRSSEPDELRNMLTGSAPARPMAR
Nucleotide
Download Length: 1089 bp
>NTDB_id=153560 AKJ08_RS03375 WP_050724765.1 833793..834881(+) (pilT) [Vulgatibacter incomptus strain DSM 27710]
GTGGCCAACCTGCATCAGCTCCTCAAGCAGATGGTGGAGAAGGGGGCGTCCGACCTCCACATCACCGCCTCGTCGCCGCC
GCAGCTCCGCATCGACGGCAAGCTCATGCCGCTCAAGCAGGCGCCGCTCACGCCCGTGGAGACCAAGCAGATCTGCTACT
CGGTCCTCACCGAGGCGCAGAAGCACAAGTTCGAGGAAGAGAACGAGCTCGACGCCTCCTTCGGCGTGAAGGGCCTCTCG
CGCTTCCGCGCCAACGTCTTCCTGCAGCGCGGCGCCGTCGCCGGCGCGTTCCGAACCATCCCCTTCAAGGTGATGAGCTT
CGCCGACCTGGGCCTGCCGCCCATCGTCTCCACGCTGGCCGAGAAGCCGCGCGGCCTCGTCCTCGTCACCGGCCCCACCG
GCTCCGGCAAGTCCACCACGCTCGCGTCGATCATCGACAAGATCAACACCGAGCGGAACGCGCACATCATCACCATCGAA
GATCCGATCGAGTATCTGCACCCCCACAAGAACTCGGTCGTGAATCAGCGAGAGGTCGGCGCCGACACCGACAGCTTCAA
GAAGGCGCTCAAGTACATCCTCCGCCAGGATCCCGACGTCGTCCTCGTCGGCGAGATGCGCGACCGGGAGACGGTGGAGG
CCGCCCTCACCATCGCCGAGACCGGTCACCTCTGCTTCGCCACCCTCCACACCAACTCGGCGATCCAGACCATCAACCGC
ATCCTCGACATCTTCCCCGCCAACCAGCAGAGCCAGGTCCGGGCCCAGCTCTCCTTCGTGCTCGAGGGAGTCGTCACCCA
GAACCTGCTCCCCAAGGCCGTCGGGAACGGCCGGGTCCTCGCCGCGGAGGTGATGGTCCCCAACCCCGCCATCCGGAACC
TCATCCGCGAGGACAAGCTCCACCAGGTCTACTCGCAGATGCAGGTCGGCCAGGCCAAGTTCGGCATGCAGACCTTCAAC
CAGAGCCTCTTCGGCCTGCTGCAGAAGCGGCTGATCACCGTCGACGAGGCCATGAGCCGCTCCTCCGAGCCCGACGAGCT
CCGCAACATGCTCACCGGCAGCGCTCCGGCGCGCCCGATGGCGCGATAA
GTGGCCAACCTGCATCAGCTCCTCAAGCAGATGGTGGAGAAGGGGGCGTCCGACCTCCACATCACCGCCTCGTCGCCGCC
GCAGCTCCGCATCGACGGCAAGCTCATGCCGCTCAAGCAGGCGCCGCTCACGCCCGTGGAGACCAAGCAGATCTGCTACT
CGGTCCTCACCGAGGCGCAGAAGCACAAGTTCGAGGAAGAGAACGAGCTCGACGCCTCCTTCGGCGTGAAGGGCCTCTCG
CGCTTCCGCGCCAACGTCTTCCTGCAGCGCGGCGCCGTCGCCGGCGCGTTCCGAACCATCCCCTTCAAGGTGATGAGCTT
CGCCGACCTGGGCCTGCCGCCCATCGTCTCCACGCTGGCCGAGAAGCCGCGCGGCCTCGTCCTCGTCACCGGCCCCACCG
GCTCCGGCAAGTCCACCACGCTCGCGTCGATCATCGACAAGATCAACACCGAGCGGAACGCGCACATCATCACCATCGAA
GATCCGATCGAGTATCTGCACCCCCACAAGAACTCGGTCGTGAATCAGCGAGAGGTCGGCGCCGACACCGACAGCTTCAA
GAAGGCGCTCAAGTACATCCTCCGCCAGGATCCCGACGTCGTCCTCGTCGGCGAGATGCGCGACCGGGAGACGGTGGAGG
CCGCCCTCACCATCGCCGAGACCGGTCACCTCTGCTTCGCCACCCTCCACACCAACTCGGCGATCCAGACCATCAACCGC
ATCCTCGACATCTTCCCCGCCAACCAGCAGAGCCAGGTCCGGGCCCAGCTCTCCTTCGTGCTCGAGGGAGTCGTCACCCA
GAACCTGCTCCCCAAGGCCGTCGGGAACGGCCGGGTCCTCGCCGCGGAGGTGATGGTCCCCAACCCCGCCATCCGGAACC
TCATCCGCGAGGACAAGCTCCACCAGGTCTACTCGCAGATGCAGGTCGGCCAGGCCAAGTTCGGCATGCAGACCTTCAAC
CAGAGCCTCTTCGGCCTGCTGCAGAAGCGGCTGATCACCGTCGACGAGGCCATGAGCCGCTCCTCCGAGCCCGACGAGCT
CCGCAACATGCTCACCGGCAGCGCTCCGGCGCGCCCGATGGCGCGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
53.043 |
95.304 |
0.506 |
| pilT | Legionella pneumophila strain Lp02 |
53.776 |
91.436 |
0.492 |
| pilT | Legionella pneumophila strain ERS1305867 |
53.776 |
91.436 |
0.492 |
| pilT | Pseudomonas stutzeri DSM 10701 |
49.275 |
95.304 |
0.47 |
| pilT | Acinetobacter baylyi ADP1 |
48.986 |
95.304 |
0.467 |
| pilT | Acinetobacter baumannii strain A118 |
48.696 |
95.304 |
0.464 |
| pilT | Acinetobacter baumannii D1279779 |
48.696 |
95.304 |
0.464 |
| pilT | Acinetobacter nosocomialis M2 |
48.696 |
95.304 |
0.464 |
| pilT | Pseudomonas aeruginosa PAK |
48.406 |
95.304 |
0.461 |
| pilT | Vibrio cholerae strain A1552 |
47.929 |
93.37 |
0.448 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
47.929 |
93.37 |
0.448 |
| pilT | Neisseria meningitidis 8013 |
48.348 |
91.989 |
0.445 |
| pilT | Neisseria gonorrhoeae MS11 |
47.892 |
91.713 |
0.439 |
| pilU | Pseudomonas stutzeri DSM 10701 |
43.678 |
96.133 |
0.42 |
| pilU | Vibrio cholerae strain A1552 |
42.693 |
96.409 |
0.412 |
| pilU | Acinetobacter baylyi ADP1 |
41.499 |
95.856 |
0.398 |