Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AKJ08_RS03390 Genome accession   NZ_CP012332
Coordinates   837978..839372 (+) Length   464 a.a.
NCBI ID   WP_050724768.1    Uniprot ID   -
Organism   Vulgatibacter incomptus strain DSM 27710     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 832978..844372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKJ08_RS03375 (AKJ08_0686) pilT 833793..834881 (+) 1089 WP_050724765.1 type IV pilus twitching motility protein PilT Machinery gene
  AKJ08_RS03380 (AKJ08_0687) - 834936..836198 (+) 1263 WP_050724766.1 type II secretion system F family protein -
  AKJ08_RS03385 (AKJ08_0688) - 836308..837975 (+) 1668 WP_050724767.1 two-component system sensor histidine kinase NtrB -
  AKJ08_RS03390 (AKJ08_0689) pilR 837978..839372 (+) 1395 WP_050724768.1 sigma-54-dependent transcriptional regulator Regulator
  AKJ08_RS03395 (AKJ08_0690) - 839369..841786 (-) 2418 WP_050724769.1 PilC/PilY family type IV pilus protein -
  AKJ08_RS03400 (AKJ08_0691) - 841783..842331 (-) 549 WP_050724770.1 PilX N-terminal domain-containing pilus assembly protein -
  AKJ08_RS03405 (AKJ08_0692) - 842334..843416 (-) 1083 WP_050724771.1 PilW family protein -
  AKJ08_RS03410 (AKJ08_0693) pilV 843418..843942 (-) 525 WP_082342636.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51039.63 Da        Isoelectric Point: 5.2400

>NTDB_id=153561 AKJ08_RS03390 WP_050724768.1 837978..839372(+) (pilR) [Vulgatibacter incomptus strain DSM 27710]
MAHLLVVDDERSMREMLEILLQKVGHSVVAEEDAGAACERLEHEEFDLVVTDLRLGQRSGLEVLERAKALHPHTEVLMIT
AFASAENAVQAMKLGAYDYLTKPFKIDELLVVVEKALEKRALVRENVQLRRQLGDRARFAGILGKSAAMRELFALLDKVA
PSRTTVLVTGESGVGKELVARALHEKGGRAAGPFVAVNCGAIPEGLIESELFGHEKGAFTGAVAAKPGLFSEASGGTLFL
DEIGELPLAVQVKLLRALQQRVVRPVGGLRDVEIDVRIVAATNRDLEQEVREGRFREDLYYRLNVIGLKVPPVRERREDV
LLLAEHFLQAFAKEQGRPGMAFSRAAQRALLDYDFPGNVRELENVVERAVTLSDGDEIEPDTFPAAVRGASPTFAVPYAG
ALSGVDLPDDFDLQAWLDACEREMLEKALERSRGVKTEAAKLLGITFRSIRYRLEKLRMEGGGS

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=153561 AKJ08_RS03390 WP_050724768.1 837978..839372(+) (pilR) [Vulgatibacter incomptus strain DSM 27710]
ATGGCACATCTCCTCGTCGTCGACGACGAGCGCTCGATGCGTGAGATGCTCGAGATCCTCCTCCAGAAGGTGGGCCACAG
CGTGGTCGCCGAGGAAGACGCCGGCGCCGCGTGTGAACGCCTGGAGCACGAGGAGTTCGACCTCGTCGTCACCGATCTCC
GGCTGGGGCAGCGCTCCGGCCTCGAGGTCCTCGAGAGGGCCAAGGCGCTCCATCCGCACACCGAGGTGCTGATGATCACC
GCCTTCGCCTCGGCCGAGAACGCCGTCCAGGCGATGAAGCTCGGCGCCTACGACTACCTCACCAAGCCCTTCAAGATCGA
CGAGCTCCTCGTCGTCGTCGAGAAGGCCCTCGAAAAGCGCGCCCTCGTCCGCGAGAACGTCCAGCTCCGCCGCCAGCTCG
GCGACCGCGCCCGTTTCGCCGGCATCCTTGGCAAGAGCGCCGCCATGCGGGAGCTCTTCGCCCTCCTCGACAAGGTCGCC
CCCTCCCGCACCACCGTCCTCGTCACCGGCGAGTCCGGCGTCGGCAAGGAGCTCGTCGCCCGCGCCCTCCACGAGAAGGG
CGGCAGGGCCGCCGGACCCTTCGTCGCCGTCAACTGTGGCGCTATCCCCGAGGGCCTCATCGAGAGCGAGCTCTTCGGCC
ACGAGAAGGGCGCCTTCACCGGCGCCGTCGCCGCCAAGCCCGGCCTCTTCTCCGAGGCGAGCGGCGGCACCCTCTTTCTC
GACGAGATCGGCGAGCTCCCTCTGGCTGTGCAGGTGAAACTCCTGCGCGCCCTGCAGCAGCGCGTCGTCCGCCCGGTGGG
CGGCCTGCGCGACGTCGAGATCGACGTGCGCATCGTCGCCGCTACCAACCGCGATCTCGAGCAGGAGGTGCGGGAGGGAC
GCTTCCGGGAGGATCTCTACTACCGGCTCAACGTCATCGGCCTCAAGGTCCCGCCCGTGCGCGAGCGGAGGGAGGACGTG
CTCCTCCTGGCCGAGCACTTCCTCCAGGCGTTCGCCAAGGAGCAGGGTAGGCCGGGAATGGCCTTCTCGCGCGCCGCCCA
GCGCGCCCTCCTGGATTACGACTTCCCCGGCAATGTCCGCGAGCTCGAGAACGTGGTCGAGCGCGCCGTCACCTTGAGCG
ACGGCGACGAGATCGAGCCCGACACCTTTCCGGCCGCCGTGCGCGGAGCGTCGCCGACCTTCGCCGTTCCGTACGCCGGC
GCTCTCTCGGGCGTCGACCTCCCCGACGACTTCGACCTCCAGGCCTGGCTCGACGCCTGCGAGCGCGAGATGCTCGAGAA
GGCCCTCGAGCGCTCCCGCGGCGTCAAGACCGAGGCGGCCAAGCTCCTCGGGATCACCTTCCGCAGCATCCGCTACCGAT
TGGAGAAGCTGCGGATGGAGGGGGGAGGCTCCTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(419-457)

Sigma-54 interaction domain (Sigma54_activat)

(142-308)

Response regulator receiver domain (Response_reg)

(5-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

49.227

97.629

0.481
  pilR Acinetobacter baumannii strain A118

39.703

100

0.403
  luxO Vibrio cholerae strain A1552

40.38

90.733

0.366

Multiple sequence alignment