Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   AMD29_RS00615 Genome accession   NZ_CP012419
Coordinates   81077..81556 (+) Length   159 a.a.
NCBI ID   WP_001204194.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 76077..86556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS11675 (AMD29_00600) - 78100..78531 (+) 432 WP_000761053.1 hypothetical protein -
  AMD29_RS11560 - 78601..78771 (+) 171 WP_000840973.1 hypothetical protein -
  AMD29_RS00605 (AMD29_00605) - 79687..80238 (+) 552 WP_000161843.1 nucleotidyltransferase family protein -
  AMD29_RS00610 (AMD29_00610) - 80458..80877 (+) 420 WP_000784700.1 YjdF family protein -
  AMD29_RS00615 (AMD29_00615) comX/sigX 81077..81556 (+) 480 WP_001204194.1 sigma-70 family RNA polymerase sigma factor Regulator
  AMD29_RS00620 (AMD29_00620) - 81735..82832 (-) 1098 WP_000570848.1 site-specific integrase -
  AMD29_RS11920 - 83453..83692 (-) 240 Protein_75 hypothetical protein -
  AMD29_RS00630 (AMD29_00630) - 83701..84078 (-) 378 WP_053515022.1 ImmA/IrrE family metallo-endopeptidase -
  AMD29_RS00635 (AMD29_00635) - 84062..84403 (-) 342 WP_053515023.1 helix-turn-helix domain-containing protein -
  AMD29_RS00640 (AMD29_00640) - 84599..84811 (+) 213 WP_053515024.1 helix-turn-helix transcriptional regulator -
  AMD29_RS00645 (AMD29_00645) - 84840..85565 (+) 726 WP_053515025.1 phage antirepressor KilAC domain-containing protein -
  AMD29_RS11565 - 85598..85756 (+) 159 WP_017647876.1 hypothetical protein -
  AMD29_RS00650 (AMD29_00650) - 85753..86046 (-) 294 WP_001104373.1 hypothetical protein -
  AMD29_RS00655 (AMD29_00655) - 86175..86432 (+) 258 WP_001191791.1 hypothetical protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19447.28 Da        Isoelectric Point: 6.2639

>NTDB_id=133604 AMD29_RS00615 WP_001204194.1 81077..81556(+) (comX/sigX) [Streptococcus agalactiae strain SG-M1]
MRDFEELFDKVKPIVMKLRRNYFVQLWEYDDWIQEGRIVLFRLLEEHPYLLDNESKLFIYFKTKFSNYLNDVLRHQDCQK
RQFNKMPYEEISEVSHYVKSKGLVLDDYIAYRDTLTKVEETLSDIDKEKFEKLISGERFAGKKQFIRDIQPFFNAFKAD

Nucleotide


Download         Length: 480 bp        

>NTDB_id=133604 AMD29_RS00615 WP_001204194.1 81077..81556(+) (comX/sigX) [Streptococcus agalactiae strain SG-M1]
TTGAGAGATTTTGAGGAGTTGTTTGATAAAGTAAAGCCAATCGTAATGAAGCTGAGAAGAAATTATTTTGTTCAACTTTG
GGAATATGATGATTGGATTCAAGAAGGACGTATTGTACTTTTTAGGTTGCTTGAAGAGCATCCGTATTTATTGGATAATG
AAAGCAAACTATTCATTTACTTTAAAACAAAATTTTCAAATTATTTAAACGATGTATTAAGACACCAAGATTGTCAAAAG
CGACAATTTAATAAAATGCCTTATGAAGAAATCAGTGAAGTTAGTCACTATGTTAAGAGTAAAGGACTAGTTTTAGATGA
CTATATTGCTTATCGTGATACTTTAACAAAAGTGGAAGAAACTTTGTCAGATATTGATAAAGAAAAATTTGAAAAACTGA
TTAGTGGTGAACGTTTTGCGGGGAAGAAACAATTCATACGAGATATTCAACCTTTTTTCAATGCTTTTAAAGCGGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

56.688

98.742

0.56
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

52.349

93.711

0.491
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

52.349

93.711

0.491
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

52.349

93.711

0.491
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

52.349

93.711

0.491
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

52

94.34

0.491
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

52

94.34

0.491
  comX/sigX Streptococcus mutans UA159

49.677

97.484

0.484
  comX Streptococcus sobrinus strain NIDR 6715-7

43.59

98.113

0.428
  comX/sigX Streptococcus suis D9

43.226

97.484

0.421
  comX/sigX Streptococcus suis isolate S10

43.226

97.484

0.421
  comX/sigX Streptococcus suis P1/7

43.226

97.484

0.421
  comX Streptococcus thermophilus LMD-9

42.177

92.453

0.39
  comX Streptococcus thermophilus LMG 18311

42.177

92.453

0.39
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

39.869

96.226

0.384
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

39.869

96.226

0.384
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

39.869

96.226

0.384
  comX/comX2 Streptococcus pneumoniae Rx1

40.397

94.969

0.384
  comX/comX2 Streptococcus pneumoniae TIGR4

40.397

94.969

0.384
  comX/comX1 Streptococcus pneumoniae TIGR4

40.397

94.969

0.384
  comX/comX1 Streptococcus pneumoniae Rx1

40.397

94.969

0.384
  comX/comX2 Streptococcus pneumoniae D39

40.397

94.969

0.384
  comX/comX1 Streptococcus pneumoniae D39

40.397

94.969

0.384
  comX/comX2 Streptococcus pneumoniae R6

40.397

94.969

0.384
  comX/comX1 Streptococcus pneumoniae R6

40.397

94.969

0.384
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

39.216

96.226

0.377
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

39.216

96.226

0.377
  comX Streptococcus salivarius SK126

40.816

92.453

0.377
  comX/sigX Streptococcus salivarius strain HSISS4

40.816

92.453

0.377
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

38.562

96.226

0.371

Multiple sequence alignment