Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   DK43_RS01685 Genome accession   NZ_CP007573
Coordinates   340819..341292 (+) Length   157 a.a.
NCBI ID   WP_022525320.1    Uniprot ID   -
Organism   Streptococcus anginosus strain SA1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 335819..346292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS01660 (DK43_01725) - 337101..337856 (-) 756 Protein_333 hypothetical protein -
  DK43_RS01665 (DK43_01730) - 338004..339065 (+) 1062 WP_004224573.1 Xaa-Pro peptidase family protein -
  DK43_RS01670 (DK43_01735) efp 339124..339684 (+) 561 WP_003026309.1 elongation factor P -
  DK43_RS01675 (DK43_01740) - 339795..340184 (+) 390 WP_006269324.1 Asp23/Gls24 family envelope stress response protein -
  DK43_RS01680 (DK43_01745) nusB 340177..340602 (+) 426 WP_003037723.1 transcription antitermination factor NusB -
  DK43_RS01685 (DK43_01750) comR/comR2 340819..341292 (+) 474 WP_022525320.1 sigma-70 family RNA polymerase sigma factor Regulator
  DK43_RS01690 (DK43_01755) - 341485..342303 (+) 819 Protein_339 HAD family hydrolase -
  DK43_RS01695 (DK43_01760) - 342328..343011 (+) 684 WP_022525317.1 LacI family DNA-binding transcriptional regulator -
  DK43_RS09865 - 343069..343260 (+) 192 WP_022525316.1 hypothetical protein -
  DK43_RS10400 - 343651..343788 (+) 138 WP_187152427.1 hypothetical protein -
  DK43_RS01700 (DK43_01765) - 343785..344441 (+) 657 WP_037593447.1 DUF4230 domain-containing protein -
  DK43_RS01705 (DK43_01770) - 344750..345607 (+) 858 WP_022525314.1 DUF6287 domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19283.16 Da        Isoelectric Point: 7.9720

>NTDB_id=121192 DK43_RS01685 WP_022525320.1 340819..341292(+) (comR/comR2) [Streptococcus anginosus strain SA1]
MEFKELYAKVRGIVLKCRREYYVHLWELSDWEQEGMLVLYQLVSRYPQLVESESQLYVYYKTKFRNHILDILRKQESQKR
KLDRQAYEEVSEIGHKLSLKELYLDELVILRDQLKSYQAQLSLEKQEQYERLLADERFKGRQAMIRELRAYLKDYSD

Nucleotide


Download         Length: 474 bp        

>NTDB_id=121192 DK43_RS01685 WP_022525320.1 340819..341292(+) (comR/comR2) [Streptococcus anginosus strain SA1]
ATGGAGTTCAAGGAGTTATATGCCAAGGTGAGAGGAATTGTGCTGAAGTGTCGGAGGGAATATTATGTCCACCTGTGGGA
ATTAAGCGATTGGGAACAAGAGGGCATGTTGGTGCTCTATCAGTTGGTGAGTCGCTATCCGCAGCTGGTAGAGTCAGAAA
GTCAGCTCTATGTTTACTATAAGACCAAGTTCCGCAATCATATCCTGGACATCCTCCGTAAACAGGAAAGCCAAAAACGC
AAACTGGACCGTCAAGCTTATGAAGAAGTGAGCGAGATTGGTCACAAGCTCAGTCTAAAAGAACTGTATTTGGATGAATT
GGTGATTCTCCGAGACCAGCTAAAGAGCTATCAAGCTCAACTGAGCCTAGAGAAACAAGAGCAGTACGAGCGCTTACTAG
CTGATGAACGGTTCAAAGGTCGCCAAGCTATGATTCGAGAATTAAGAGCCTACTTAAAAGACTATAGTGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

59.615

99.363

0.592
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

59.615

99.363

0.592
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

54.545

98.089

0.535
  comX/comX2 Streptococcus pneumoniae TIGR4

54.545

98.089

0.535
  comX/comX1 Streptococcus pneumoniae TIGR4

54.545

98.089

0.535
  comX/comX1 Streptococcus pneumoniae R6

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae D39

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae Rx1

53.896

98.089

0.529
  comX/comX1 Streptococcus pneumoniae Rx1

53.896

98.089

0.529
  comX/comX1 Streptococcus pneumoniae D39

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae R6

53.896

98.089

0.529
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

53.896

98.089

0.529
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

53.247

98.089

0.522
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

52.597

98.089

0.516
  comX/sigX Streptococcus mutans UA159

48.718

99.363

0.484
  comX/sigX Streptococcus suis isolate S10

48.387

98.726

0.478
  comX/sigX Streptococcus suis P1/7

48.387

98.726

0.478
  comX/sigX Streptococcus suis D9

48.387

98.726

0.478
  comX Streptococcus salivarius SK126

44.805

98.089

0.439
  comX/sigX Streptococcus salivarius strain HSISS4

44.156

98.089

0.433
  comX Streptococcus thermophilus LMG 18311

44.156

98.089

0.433
  comX Streptococcus thermophilus LMD-9

44.156

98.089

0.433
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

38.462

99.363

0.382
  comX Streptococcus sobrinus strain NIDR 6715-7

38.312

98.089

0.376

Multiple sequence alignment