Detailed information NTG0121182

Bioinformatically predicted

Overview

• Name: comR/comR2
• Type: Regulator
• Locus tag: DK43_RS00025
• Genome accession: NZ_CP007573
• Coordinates: 5584..6057 (-)
• Length: 157 a.a.
• NCBI ID: WP_022525268.1
• Uniprot ID: -
• Organism: Streptococcus anginosus strain SA1
• Function: activate transcription of late competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	4569..5051	5584..6057	flank	533

Gene organization within MGE regions

Location: 4569..6057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK43_RS09890 (DK43_00020)	-	4569..5525 (+)	957	Protein_0	IS30 family transposase	-
DK43_RS00025 (DK43_00025)	comR/comR2	5584..6057 (-)	474	WP_022525268.1	sigma-70 family RNA polymerase sigma factor	Regulator

Sequence

Protein

• Length: 157 a.a.
• Molecular weight: 19345.19 Da
• Isoelectric Point: 7.3491

>NTDB_id=121182 DK43_RS00025 WP_022525268.1 5584..6057(-) (comR/comR2) [Streptococcus anginosus strain SA1]
MEFKELYAKVRGIVLKCRREYYVHLWELSDWEQEGMLVLYQLVSRYPQLVEEDHQLYVYYKTKFRNHILDILRKQESQKR
KLDRQAYEEVSEIGHKLSLKELYLDELVILRDQLKSYQAQLSPEKQEQYERLLADERFKGRQAMIRELRAYLKDYSD

Nucleotide

• Length: 474 bp

>NTDB_id=121182 DK43_RS00025 WP_022525268.1 5584..6057(-) (comR/comR2) [Streptococcus anginosus strain SA1]
ATGGAGTTCAAGGAGTTATATGCCAAGGTGAGAGGAATTGTGCTGAAGTGTCGGAGGGAATATTATGTCCACCTGTGGGA
ATTAAGCGATTGGGAACAAGAGGGCATGTTGGTGCTCTATCAGTTGGTGAGTCGCTATCCGCAGCTAGTAGAAGAAGATC
ATCAGCTTTATGTTTACTATAAGACCAAGTTTCGTAATCATATCTTGGACATCCTCCGTAAGCAGGAAAGTCAAAAACGC
AAACTTGATCGTCAAGCTTATGAAGAAGTGAGCGAGATTGGTCACAAGCTCAGCCTAAAAGAACTATATCTGGATGAATT
GGTGATTCTCCGAGACCAGCTAAAGAGCTATCAAGCTCAACTGAGCCCAGAGAAACAGGAGCAGTACGAGCGCTTACTAG
CCGATGAACGGTTCAAAGGCCGCCAAGCCATGATTCGAGAATTAAGAGCCTACTTAAAGGACTATAGCGATTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comR/comR2	Streptococcus gordonii str. Challis substr. CH1	60.256	99.363	0.599
comR/comR1	Streptococcus gordonii str. Challis substr. CH1	60.256	99.363	0.599
comX/comX2	Streptococcus pneumoniae TIGR4	54.545	98.089	0.535
comX/comX1	Streptococcus pneumoniae TIGR4	54.545	98.089	0.535
comX/sigX/comX2/sigX2	Streptococcus mitis NCTC 12261	54.545	98.089	0.535
comX/comX1	Streptococcus pneumoniae R6	53.896	98.089	0.529
comX/comX2	Streptococcus pneumoniae D39	53.896	98.089	0.529
comX/comX2	Streptococcus pneumoniae Rx1	53.896	98.089	0.529
comX/comX1	Streptococcus pneumoniae Rx1	53.896	98.089	0.529
comX/comX1	Streptococcus pneumoniae D39	53.896	98.089	0.529
comX/comX2	Streptococcus pneumoniae R6	53.896	98.089	0.529
comX/sigX/comX2/sigX2	Streptococcus mitis SK321	53.896	98.089	0.529
comX/sigX/comX1/sigX1	Streptococcus mitis NCTC 12261	53.247	98.089	0.522
comX/sigX/comX1/sigX1	Streptococcus mitis SK321	52.597	98.089	0.516
comX/sigX	Streptococcus mutans UA159	49.359	99.363	0.49
comX/sigX	Streptococcus suis D9	49.032	98.726	0.484
comX/sigX	Streptococcus suis isolate S10	49.032	98.726	0.484
comX/sigX	Streptococcus suis P1/7	49.032	98.726	0.484
comX	Streptococcus salivarius SK126	45.455	98.089	0.446
comX/sigX	Streptococcus salivarius strain HSISS4	44.805	98.089	0.439
comX	Streptococcus thermophilus LMG 18311	44.805	98.089	0.439
comX	Streptococcus thermophilus LMD-9	44.805	98.089	0.439
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS8232	42.308	99.363	0.42
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS8232	42.308	99.363	0.42
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS315	42.308	99.363	0.42
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS315	42.308	99.363	0.42
comX/sigX/comX2/sigX2	Streptococcus pyogenes JRS4	42.308	99.363	0.42
comX/sigX/comX1/sigX1	Streptococcus pyogenes JRS4	42.308	99.363	0.42
comX/sigX	Streptococcus infantarius subsp. infantarius ATCC BAA-102	37.821	99.363	0.376
comX	Streptococcus sobrinus strain NIDR 6715-7	38.562	97.452	0.376