Detailed information NTG1159522

Bioinformatically predicted

Overview

• Name: comX/sigX
• Type: Regulator
• Locus tag: QOR68_RS00720
• Genome accession: NZ_OX460984
• Coordinates: 101485..101964 (+)
• Length: 159 a.a.
• NCBI ID: WP_001204194.1
• Uniprot ID: A0AAV3JNR5
• Organism: Streptococcus agalactiae isolate MRI Z2-172
• Function: activate transcription of late competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	100579..101442	101485..101964	flank	43

Gene organization within MGE regions

Location: 100579..101964

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QOR68_RS00715	-	100579..101442 (+)	864	WP_000018958.1	IS982-like element ISSa4 family transposase	-
QOR68_RS00720	comX/sigX	101485..101964 (+)	480	WP_001204194.1	sigma-70 family RNA polymerase sigma factor	Regulator

Sequence

Protein

• Length: 159 a.a.
• Molecular weight: 19447.28 Da
• Isoelectric Point: 6.2639

>NTDB_id=1159522 QOR68_RS00720 WP_001204194.1 101485..101964(+) (comX/sigX) [Streptococcus agalactiae isolate MRI Z2-172]
MRDFEELFDKVKPIVMKLRRNYFVQLWEYDDWIQEGRIVLFRLLEEHPYLLDNESKLFIYFKTKFSNYLNDVLRHQDCQK
RQFNKMPYEEISEVSHYVKSKGLVLDDYIAYRDTLTKVEETLSDIDKEKFEKLISGERFAGKKQFIRDIQPFFNAFKAD

Nucleotide

• Length: 480 bp

>NTDB_id=1159522 QOR68_RS00720 WP_001204194.1 101485..101964(+) (comX/sigX) [Streptococcus agalactiae isolate MRI Z2-172]
TTGAGAGATTTTGAGGAGTTGTTTGATAAAGTAAAGCCAATCGTAATGAAGCTGAGAAGAAATTATTTTGTTCAACTTTG
GGAATATGATGATTGGATTCAAGAAGGACGTATTGTACTTTTTAGGTTGCTTGAAGAGCATCCGTATTTATTGGATAATG
AAAGCAAACTATTCATTTACTTTAAAACAAAATTTTCAAATTATTTAAACGATGTATTAAGACACCAAGATTGTCAAAAG
CGACAATTTAATAAAATGCCTTATGAAGAAATAAGTGAAGTTAGTCACTATGTTAAGAGTAAAGGACTAGTTTTAGATGA
CTATATTGCTTATCGTGATACTTTAACAAAAGTGGAAGAAACTTTGTCAGATATTGATAAAGAAAAATTTGAAAAACTGA
TTAGTGGTGAACGTTTTGCGGGGAAGAAACAATTCATACGAGATATTCAACCTTTTTTCAATGCTTTTAAAGCGGATTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comX/sigX	Streptococcus infantarius subsp. infantarius ATCC BAA-102	56.688	98.742	0.56
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS8232	52.349	93.711	0.491
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS8232	52.349	93.711	0.491
comX/sigX/comX1/sigX1	Streptococcus pyogenes JRS4	52.349	93.711	0.491
comX/sigX/comX2/sigX2	Streptococcus pyogenes JRS4	52.349	93.711	0.491
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS315	52	94.34	0.491
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS315	52	94.34	0.491
comX/sigX	Streptococcus mutans UA159	49.677	97.484	0.484
comX	Streptococcus sobrinus strain NIDR 6715-7	43.59	98.113	0.428
comX/sigX	Streptococcus suis D9	43.226	97.484	0.421
comX/sigX	Streptococcus suis isolate S10	43.226	97.484	0.421
comX/sigX	Streptococcus suis P1/7	43.226	97.484	0.421
comX	Streptococcus thermophilus LMD-9	42.177	92.453	0.39
comX	Streptococcus thermophilus LMG 18311	42.177	92.453	0.39
comR/comR1	Streptococcus gordonii str. Challis substr. CH1	39.869	96.226	0.384
comR/comR2	Streptococcus gordonii str. Challis substr. CH1	39.869	96.226	0.384
comX/sigX/comX2/sigX2	Streptococcus mitis SK321	39.869	96.226	0.384
comX/comX2	Streptococcus pneumoniae Rx1	40.397	94.969	0.384
comX/comX2	Streptococcus pneumoniae TIGR4	40.397	94.969	0.384
comX/comX1	Streptococcus pneumoniae TIGR4	40.397	94.969	0.384
comX/comX1	Streptococcus pneumoniae Rx1	40.397	94.969	0.384
comX/comX2	Streptococcus pneumoniae D39	40.397	94.969	0.384
comX/comX1	Streptococcus pneumoniae D39	40.397	94.969	0.384
comX/comX2	Streptococcus pneumoniae R6	40.397	94.969	0.384
comX/comX1	Streptococcus pneumoniae R6	40.397	94.969	0.384
comX/sigX/comX1/sigX1	Streptococcus mitis SK321	39.216	96.226	0.377
comX/sigX/comX2/sigX2	Streptococcus mitis NCTC 12261	39.216	96.226	0.377
comX	Streptococcus salivarius SK126	40.816	92.453	0.377
comX/sigX	Streptococcus salivarius strain HSISS4	40.816	92.453	0.377
comX/sigX/comX1/sigX1	Streptococcus mitis NCTC 12261	38.562	96.226	0.371