Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   DQM67_RS01560 Genome accession   NZ_LS483383
Coordinates   290800..291282 (+) Length   160 a.a.
NCBI ID   WP_005591121.1    Uniprot ID   A0AAV3EGK4
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 285800..296282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS01540 (NCTC12479_00290) - 286123..286554 (+) 432 WP_005591125.1 DUF6892 domain-containing protein -
  DQM67_RS01545 (NCTC12479_00291) - 286874..288721 (+) 1848 WP_005592048.1 APC family permease -
  DQM67_RS01550 (NCTC12479_00292) - 288797..289762 (-) 966 WP_005591123.1 aromatic acid exporter family protein -
  DQM67_RS01555 (NCTC12479_00293) rpoE 290021..290611 (+) 591 WP_005591122.1 DNA-directed RNA polymerase subunit delta -
  DQM67_RS01560 (NCTC12479_00294) comR/comR2 290800..291282 (+) 483 WP_005591121.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 19717.27 Da        Isoelectric Point: 8.0553

>NTDB_id=1139486 DQM67_RS01560 WP_005591121.1 290800..291282(+) (comR/comR2) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MNFKERYEKVQWIVRRCARDYYVHLWESSDWEQEGMLVYYQLEESHPDISQDESRLYRYFKTKFRNHIHDILRKQESQKR
RFDRQSYEEVGTISHRLSKRELALDDLVALRSSLAAYTSKLDKEQLELYHRLLGDERFKGRKRLLRELEEYLIDFSSTVI

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1139486 DQM67_RS01560 WP_005591121.1 290800..291282(+) (comR/comR2) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGAACTTCAAGGAACGCTATGAGAAAGTGCAGTGGATTGTCCGGCGCTGTGCACGGGATTATTATGTACATTTATGGGA
GAGTAGTGACTGGGAACAAGAAGGTATGCTGGTTTATTACCAGCTAGAAGAAAGTCACCCAGATATCAGTCAAGATGAAA
GCCGCCTCTATCGTTACTTCAAGACAAAATTTCGGAATCATATTCATGACATTCTTCGCAAGCAAGAGAGCCAAAAACGC
CGGTTTGATCGACAGTCTTATGAGGAAGTTGGCACCATTAGTCATAGACTGAGCAAGCGCGAACTAGCTTTAGATGATTT
AGTCGCTCTTCGAAGTTCGTTAGCAGCCTACACTTCCAAGTTAGACAAAGAACAACTAGAGTTATACCACCGCTTACTAG
GCGATGAGCGCTTTAAGGGACGTAAAAGACTGTTGCGAGAGTTAGAGGAATATTTAATAGACTTTAGCAGCACGGTGATA
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

57.233

99.375

0.569
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

57.233

99.375

0.569
  comX/comX1 Streptococcus pneumoniae TIGR4

51.299

96.25

0.494
  comX/comX2 Streptococcus pneumoniae TIGR4

51.299

96.25

0.494
  comX/comX1 Streptococcus pneumoniae D39

50.649

96.25

0.487
  comX/comX2 Streptococcus pneumoniae Rx1

50.649

96.25

0.487
  comX/comX1 Streptococcus pneumoniae Rx1

50.649

96.25

0.487
  comX/comX2 Streptococcus pneumoniae D39

50.649

96.25

0.487
  comX/comX2 Streptococcus pneumoniae R6

50.649

96.25

0.487
  comX/comX1 Streptococcus pneumoniae R6

50.649

96.25

0.487
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

51.37

91.25

0.469
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

51.37

91.25

0.469
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

51.37

91.25

0.469
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

51.37

91.25

0.469
  comX/sigX Streptococcus mutans UA159

47.403

96.25

0.456
  comX Streptococcus thermophilus LMG 18311

42.308

97.5

0.413
  comX Streptococcus thermophilus LMD-9

42.308

97.5

0.413
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.484

95.625

0.406
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.484

95.625

0.406
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.484

95.625

0.406
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.484

95.625

0.406
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.484

95.625

0.406
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.484

95.625

0.406
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

41.667

97.5

0.406
  comX/sigX Streptococcus suis isolate S10

41.29

96.875

0.4
  comX/sigX Streptococcus suis D9

41.29

96.875

0.4
  comX/sigX Streptococcus salivarius strain HSISS4

41.29

96.875

0.4
  comX Streptococcus salivarius SK126

41.29

96.875

0.4
  comX/sigX Streptococcus suis P1/7

41.29

96.875

0.4
  comX Streptococcus sobrinus strain NIDR 6715-7

38.312

96.25

0.369

Multiple sequence alignment