Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   DQM67_RS00080 Genome accession   NZ_LS483383
Coordinates   15312..15794 (+) Length   160 a.a.
NCBI ID   WP_005591364.1    Uniprot ID   A0AAV3EGB5
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10312..20794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS00065 (NCTC12479_00011) tilS 11287..12561 (+) 1275 WP_005591367.1 tRNA lysidine(34) synthetase TilS -
  DQM67_RS00070 (NCTC12479_00012) hpt 12570..13112 (+) 543 WP_005591366.1 hypoxanthine phosphoribosyltransferase -
  DQM67_RS00075 (NCTC12479_00013) ftsH 13130..15097 (+) 1968 WP_005591365.1 ATP-dependent zinc metalloprotease FtsH -
  DQM67_RS00080 (NCTC12479_00014) comR/comR2 15312..15794 (+) 483 WP_005591364.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 19665.15 Da        Isoelectric Point: 8.0790

>NTDB_id=1139479 DQM67_RS00080 WP_005591364.1 15312..15794(+) (comR/comR2) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MNFKERYEKVQWIVRRCARDYYVHLWESSDWEQEGMLVYHQLEESHPDISQDESRLYRYFKTKFRNHIHDILRKQESQKR
RFDRQSYEEVGTISHRLSKRELALDDLVALRSSLAAYTSKLDKEQLELYHRLLGDERFKGRKRLLRELEEYLSDFSSTVI

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1139479 DQM67_RS00080 WP_005591364.1 15312..15794(+) (comR/comR2) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGAACTTCAAGGAACGCTATGAGAAAGTGCAGTGGATCGTCCGTCGCTGTGCACGGGATTATTATGTACATTTATGGGA
GAGTAGTGACTGGGAACAAGAGGGTATGCTGGTTTATCACCAGCTGGAAGAAAGTCATCCAGATATCAGTCAAGATGAAA
GTCGCCTCTATCGTTACTTCAAAACAAAATTTCGGAATCATATTCATGACATTCTTCGCAAGCAAGAGAGCCAAAAACGC
CGCTTCGATCGTCAGTCTTATGAAGAAGTTGGAACCATTAGTCATAGACTGAGCAAGCGCGAACTAGCCTTAGATGATTT
AGTCGCCCTTCGAAGTTCGTTAGCAGCCTACACTTCCAAGTTAGACAAAGAACAACTAGAGTTATACCACCGCTTACTAG
GCGATGAGCGGTTTAAGGGACGTAAAAGACTGCTGCGAGAGTTAGAGGAATATTTAAGCGACTTTAGCAGCACGGTGATA
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

56.604

99.375

0.563
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

56.604

99.375

0.563
  comX/comX2 Streptococcus pneumoniae TIGR4

51.948

96.25

0.5
  comX/comX1 Streptococcus pneumoniae TIGR4

51.948

96.25

0.5
  comX/comX1 Streptococcus pneumoniae Rx1

51.299

96.25

0.494
  comX/comX2 Streptococcus pneumoniae D39

51.299

96.25

0.494
  comX/comX1 Streptococcus pneumoniae D39

51.299

96.25

0.494
  comX/comX2 Streptococcus pneumoniae R6

51.299

96.25

0.494
  comX/comX2 Streptococcus pneumoniae Rx1

51.299

96.25

0.494
  comX/comX1 Streptococcus pneumoniae R6

51.299

96.25

0.494
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

50.327

95.625

0.481
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

50.327

95.625

0.481
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

50.327

95.625

0.481
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

50

96.25

0.481
  comX/sigX Streptococcus mutans UA159

48.701

96.25

0.469
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

42.308

97.5

0.413
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.484

95.625

0.406
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.484

95.625

0.406
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.484

95.625

0.406
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.484

95.625

0.406
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.484

95.625

0.406
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.484

95.625

0.406
  comX Streptococcus thermophilus LMG 18311

41.667

97.5

0.406
  comX Streptococcus thermophilus LMD-9

41.667

97.5

0.406
  comX/sigX Streptococcus suis D9

41.29

96.875

0.4
  comX/sigX Streptococcus suis isolate S10

41.29

96.875

0.4
  comX/sigX Streptococcus suis P1/7

41.29

96.875

0.4
  comX Streptococcus salivarius SK126

40.645

96.875

0.394
  comX/sigX Streptococcus salivarius strain HSISS4

40.645

96.875

0.394
  comX Streptococcus sobrinus strain NIDR 6715-7

37.662

96.25

0.362

Multiple sequence alignment