Detailed information NTG1127607

Bioinformatically predicted

Overview

• Name: comX/sigX
• Type: Regulator
• Locus tag: FGL16_RS00650
• Genome accession: NZ_LR594043
• Coordinates: 97910..98380 (+)
• Length: 156 a.a.
• NCBI ID: WP_014735269.1
• Uniprot ID: -
• Organism: Streptococcus suis strain NCTC10237
• Function: activate transcription of late competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	96836..97699	97910..98380	flank	211

Gene organization within MGE regions

Location: 96836..98380

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGL16_RS00645 (NCTC10237_00124)	-	96836..97699 (+)	864	WP_014735268.1	IS982 family transposase	-
FGL16_RS00650 (NCTC10237_00125)	comX/sigX	97910..98380 (+)	471	WP_014735269.1	sigma-70 family RNA polymerase sigma factor	Regulator

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 19043.97 Da
• Isoelectric Point: 9.2926

>NTDB_id=1127607 FGL16_RS00650 WP_014735269.1 97910..98380(+) (comX/sigX) [Streptococcus suis strain NCTC10237]
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKR
KFDRMPHEDIHELSHAIQSPGLINDELLMLRGALRDYQKNLSNDQLDKYEKLISGQCFNGRRKMIRDLQIHLKDFR

Nucleotide

• Length: 471 bp

>NTDB_id=1127607 FGL16_RS00650 WP_014735269.1 97910..98380(+) (comX/sigX) [Streptococcus suis strain NCTC10237]
ATGGAATTCGAAAAAGTGTACGCAAGCGTCAAAGGTATTGTAAACAAGGCTCGAAAAGAGTTTTACATTAAACTATGGGA
TCGAGATGATTGGGAACAAGAAGGAATGATGACCTTGTTTGAATTATTGGAAGCTCAACCGTGGCTAGTTGATGAACAAG
TTCAATTATATTGTTATTTTAAAGTCAAGTTCAGAAATCGAATCAAGGATCGTATCCGCAAACAGGAAAGTCAAAAACGC
AAGTTTGACCGTATGCCACATGAAGATATTCACGAATTATCTCACGCAATACAATCACCGGGATTGATAAACGATGAACT
ATTAATGCTAAGAGGTGCCTTGAGAGATTATCAAAAAAATCTGAGTAATGATCAACTTGATAAATATGAAAAATTAATTA
GCGGACAATGTTTTAATGGTCGCCGTAAAATGATACGTGATTTACAAATTCATTTGAAAGACTTTCGCTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comX/sigX	Streptococcus suis D9	98.718	100	0.987
comX/sigX	Streptococcus suis isolate S10	98.077	100	0.981
comX/sigX	Streptococcus suis P1/7	98.077	100	0.981
comR/comR2	Streptococcus gordonii str. Challis substr. CH1	48.387	99.359	0.481
comR/comR1	Streptococcus gordonii str. Challis substr. CH1	48.387	99.359	0.481
comX/sigX/comX2/sigX2	Streptococcus mitis NCTC 12261	45.098	98.077	0.442
comX/comX2	Streptococcus pneumoniae TIGR4	45.695	96.795	0.442
comX/comX1	Streptococcus pneumoniae TIGR4	45.695	96.795	0.442
comX/comX2	Streptococcus pneumoniae R6	45.033	96.795	0.436
comX/comX2	Streptococcus pneumoniae Rx1	45.033	96.795	0.436
comX/comX1	Streptococcus pneumoniae Rx1	45.033	96.795	0.436
comX/comX2	Streptococcus pneumoniae D39	45.033	96.795	0.436
comX/comX1	Streptococcus pneumoniae D39	45.033	96.795	0.436
comX/comX1	Streptococcus pneumoniae R6	45.033	96.795	0.436
comX/sigX/comX1/sigX1	Streptococcus mitis SK321	44.444	98.077	0.436
comX/sigX/comX2/sigX2	Streptococcus mitis SK321	44.444	98.077	0.436
comX/sigX	Streptococcus mutans UA159	43.226	99.359	0.429
comX/sigX/comX1/sigX1	Streptococcus mitis NCTC 12261	43.791	98.077	0.429
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS315	40.645	99.359	0.404
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS315	40.645	99.359	0.404
comX	Streptococcus sobrinus strain NIDR 6715-7	40.523	98.077	0.397
comX	Streptococcus thermophilus LMG 18311	40.523	98.077	0.397
comX	Streptococcus thermophilus LMD-9	40.523	98.077	0.397
comX/sigX/comX2/sigX2	Streptococcus pyogenes JRS4	40	99.359	0.397
comX/sigX/comX1/sigX1	Streptococcus pyogenes JRS4	40	99.359	0.397
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS8232	40	99.359	0.397
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS8232	40	99.359	0.397
comX	Streptococcus salivarius SK126	39.869	98.077	0.391
comX/sigX	Streptococcus salivarius strain HSISS4	39.869	98.077	0.391
comX/sigX	Streptococcus infantarius subsp. infantarius ATCC BAA-102	38.217	100	0.385