Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABQY64_RS15810 Genome accession   NZ_CP168194
Coordinates   3780030..3780470 (-) Length   146 a.a.
NCBI ID   WP_039812285.1    Uniprot ID   -
Organism   Xanthomonas sp. WHRI 7065     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3775030..3785470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQY64_RS15795 (ABQY64_015795) pilR 3776090..3777484 (+) 1395 WP_016901261.1 sigma-54 dependent transcriptional regulator Regulator
  ABQY64_RS15800 (ABQY64_015800) pilB 3777715..3779451 (-) 1737 WP_349779527.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQY64_RS15805 (ABQY64_015805) - 3779516..3779917 (-) 402 WP_221238164.1 pilin -
  ABQY64_RS15810 (ABQY64_015810) pilE 3780030..3780470 (-) 441 WP_039812285.1 pilin Machinery gene
  ABQY64_RS15815 (ABQY64_015815) pilC 3780794..3782050 (+) 1257 WP_039812282.1 type II secretion system F family protein Machinery gene
  ABQY64_RS15820 (ABQY64_015820) - 3782057..3782920 (+) 864 WP_016849610.1 A24 family peptidase -
  ABQY64_RS15825 (ABQY64_015825) coaE 3782934..3783572 (+) 639 WP_349779526.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14854.09 Da        Isoelectric Point: 9.4202

>NTDB_id=1042996 ABQY64_RS15810 WP_039812285.1 3780030..3780470(-) (pilE) [Xanthomonas sp. WHRI 7065]
MKKQKGFTLIELMIVVAIIAILAAIALPAYQDYLARSQVSEGLSLASGAKTAVAETYANTGAFPANNAAAGLEAAANIKG
KYVTSVTVGAGGIITAAFNTANAKLSGKNLVLTPTDNNGSISWGCITGTTIDQKYLPTSCRTAATP

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1042996 ABQY64_RS15810 WP_039812285.1 3780030..3780470(-) (pilE) [Xanthomonas sp. WHRI 7065]
ATGAAGAAGCAAAAAGGTTTCACTTTGATCGAACTCATGATCGTAGTCGCGATTATTGCAATCCTGGCTGCCATTGCGCT
GCCGGCTTACCAGGACTACTTGGCTCGTTCGCAAGTGTCGGAAGGACTTTCCCTCGCTTCTGGGGCGAAGACAGCTGTCG
CTGAAACTTATGCCAACACCGGCGCCTTCCCGGCCAATAATGCCGCCGCTGGCCTTGAGGCTGCTGCGAACATCAAGGGA
AAGTATGTGACGTCTGTGACGGTTGGGGCAGGTGGAATCATCACTGCAGCATTCAATACAGCTAATGCAAAGTTGAGTGG
CAAGAATCTCGTCCTCACCCCGACTGACAACAACGGGTCGATCAGCTGGGGGTGCATCACCGGCACTACGATTGATCAGA
AGTATCTGCCGACCTCTTGCCGCACTGCAGCGACCCCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

48.125

100

0.527
  pilE Neisseria gonorrhoeae strain FA1090

47.799

100

0.521
  pilA2 Legionella pneumophila str. Paris

52.857

95.89

0.507
  pilA/pilA1 Eikenella corrodens VA1

47.097

100

0.5
  pilA2 Legionella pneumophila strain ERS1305867

52.143

95.89

0.5
  comP Acinetobacter baylyi ADP1

48

100

0.493
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

37.5

100

0.473
  pilA Ralstonia pseudosolanacearum GMI1000

40.244

100

0.452
  pilA Acinetobacter baumannii strain A118

42.667

100

0.438
  pilA Pseudomonas aeruginosa PAK

40.132

100

0.418
  pilA Vibrio campbellii strain DS40M4

40.268

100

0.411
  pilA Vibrio cholerae strain A1552

38.816

100

0.404
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.816

100

0.404
  pilA Vibrio cholerae C6706

38.816

100

0.404
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.288

95.205

0.384

Multiple sequence alignment