Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABQY64_RS15795 Genome accession   NZ_CP168194
Coordinates   3776090..3777484 (+) Length   464 a.a.
NCBI ID   WP_016901261.1    Uniprot ID   -
Organism   Xanthomonas sp. WHRI 7065     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3771090..3782484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQY64_RS15780 (ABQY64_015780) sucD 3771983..3772858 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABQY64_RS15785 (ABQY64_015785) sucC 3772883..3774052 (-) 1170 WP_039519379.1 ADP-forming succinate--CoA ligase subunit beta -
  ABQY64_RS15790 (ABQY64_015790) - 3774284..3775897 (+) 1614 WP_039512337.1 PAS domain-containing sensor histidine kinase -
  ABQY64_RS15795 (ABQY64_015795) pilR 3776090..3777484 (+) 1395 WP_016901261.1 sigma-54 dependent transcriptional regulator Regulator
  ABQY64_RS15800 (ABQY64_015800) pilB 3777715..3779451 (-) 1737 WP_349779527.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQY64_RS15805 (ABQY64_015805) - 3779516..3779917 (-) 402 WP_221238164.1 pilin -
  ABQY64_RS15810 (ABQY64_015810) pilE 3780030..3780470 (-) 441 WP_039812285.1 pilin Machinery gene
  ABQY64_RS15815 (ABQY64_015815) pilC 3780794..3782050 (+) 1257 WP_039812282.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50204.60 Da        Isoelectric Point: 6.5112

>NTDB_id=1042994 ABQY64_RS15795 WP_016901261.1 3776090..3777484(+) (pilR) [Xanthomonas sp. WHRI 7065]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1042994 ABQY64_RS15795 WP_016901261.1 3776090..3777484(+) (pilR) [Xanthomonas sp. WHRI 7065]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCTGACGGCAACGGCATCGAGCTGGTTACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCTTTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCGCTGGAATTGAATAACCGCGACCGCCCTGCCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTGGGCGATTCCAGTGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTAGGCAAGGAGCTGGTCGCGCGCACCATCCACGAACAGGGAGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGTGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCACATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTACAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCAGTGCGCCCGGTGGGCGC
CTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACACCAGGCAGCGCCGCC
GTCGAACCCCGCGAAGCGGTGGTCGACATCGACCCCGCCTCAGCCGCCCTGCCCTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment