Detailed information NTG1042997

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ABQY64_RS15815
• Genome accession: NZ_CP168194
• Coordinates: 3780794..3782050 (+)
• Length: 418 a.a.
• NCBI ID: WP_039812282.1
• Uniprot ID: -
• Organism: Xanthomonas sp. WHRI 7065
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3775794..3787050

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABQY64_RS15795 (ABQY64_015795)	pilR	3776090..3777484 (+)	1395	WP_016901261.1	sigma-54 dependent transcriptional regulator	Regulator
ABQY64_RS15800 (ABQY64_015800)	pilB	3777715..3779451 (-)	1737	WP_349779527.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABQY64_RS15805 (ABQY64_015805)	-	3779516..3779917 (-)	402	WP_221238164.1	pilin	-
ABQY64_RS15810 (ABQY64_015810)	pilE	3780030..3780470 (-)	441	WP_039812285.1	pilin	Machinery gene
ABQY64_RS15815 (ABQY64_015815)	pilC	3780794..3782050 (+)	1257	WP_039812282.1	type II secretion system F family protein	Machinery gene
ABQY64_RS15820 (ABQY64_015820)	-	3782057..3782920 (+)	864	WP_016849610.1	A24 family peptidase	-
ABQY64_RS15825 (ABQY64_015825)	coaE	3782934..3783572 (+)	639	WP_349779526.1	dephospho-CoA kinase	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 45875.31 Da
• Isoelectric Point: 10.3359

>NTDB_id=1042997 ABQY64_RS15815 WP_039812282.1 3780794..3782050(+) (pilC) [Xanthomonas sp. WHRI 7065]
MSVARSSIKKQPIDRNVNEMVPFVWEGTDKRGVKMKGEQPARNANMLRAELRRQGITPIVVKTKPKPLFGAAGKKISSKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLHEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWL
MLLGSIAAIAGFIFAYKRSPRMRHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV

Nucleotide

• Length: 1257 bp

>NTDB_id=1042997 ABQY64_RS15815 WP_039812282.1 3780794..3782050(+) (pilC) [Xanthomonas sp. WHRI 7065]
ATGTCAGTCGCCCGTAGCAGCATCAAGAAACAGCCGATAGACCGAAACGTAAATGAAATGGTGCCCTTCGTCTGGGAAGG
TACAGACAAGCGTGGCGTCAAGATGAAGGGGGAACAGCCCGCTCGCAATGCAAACATGTTGCGCGCCGAGCTTCGGCGGC
AGGGGATCACGCCGATAGTTGTAAAGACCAAGCCGAAGCCGCTTTTTGGCGCTGCTGGCAAAAAGATATCGTCCAAAGAC
ATTGCGTTCTTTAGCCGCCAAATGGCAACAATGATGAAGTCAGGGGTACCTATCGTTGGGTCGCTTGAAATTATTGGCGA
AGGACATAAAAACCCTCGCATGAAAAAGATGGTTGGTCAAATTAGGACTGATATTGAAGGAGGATCGTCGCTACATGAAG
CAATTTCGCGACATCCAGTCCAGTTCGATGACCTTTATCGAAATCTAGTTCGGGCGGGCGAAGGTGCAGGCGTCTTAGAA
ACCGTTCTAGATACTGTTGCGAATTATAAGGAAAACATCGAAGCTTTGAAGGGCAAAATAAAGAAGGCCTTATTTTATCC
TGCTATGGTGATGGCAGTCGCCATCATCGTTAGCGGAATTTTGCTTGTTTTTGTTGTTCCTCAGTTCGAGGATGTGTTCA
AAGGGTTCGGAGCAGAATTGCCTGCCTTCACTCAGATGATCGTTGCCGCATCTCGCTTCATGGTGTCTTATTGGTGGCTA
ATGCTACTTGGCAGTATCGCAGCGATTGCGGGATTCATCTTTGCTTACAAGCGCTCTCCCCGCATGCGTCATGGGATGGA
CAGGCTAGTGTTGAAGGTGCCAATCATTGGCCAAATCATGCATAACAGCTCAATCGCCAGATTTGCCCGAACGACTGCTG
TAACGTTCAAGGCGGGCGTTCCACTAGTTGAAGCTTTGAGCATTGTTGCCGGCGCGACTGGCAATAAAGTTTATGAGGAA
GCTGTGCTCCGTATGCGCGATGACGTTTCTGTAGGCTACCCTGTCAATATGGCGATGAAGCAAGTCAATCTTTTCCCACA
CATGGTGGTTCAGATGACTTCGATCGGCGAGGAAGCAGGCGCCTTAGATGCCATGTTATTCAAAGTAGCTGAATATTTCG
AGCAGGAAGTTAATAACGCCGTGGATGCATTGAGCAGCCTGCTGGAACCATTGATCATGGTGTTCATTGGCACAATTGTG
GGCGGCATGGTAATTGGCATGTATCTTCCCATCTTCAAACTTGGCTCAGTGGTGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Acinetobacter baylyi ADP1	53.401	94.976	0.507
pilC	Pseudomonas stutzeri DSM 10701	53.535	94.737	0.507
pilC	Acinetobacter baumannii D1279779	52.239	96.172	0.502
pilC	Legionella pneumophila strain ERS1305867	50.246	97.129	0.488
pilG	Neisseria gonorrhoeae MS11	44.836	94.976	0.426
pilG	Neisseria meningitidis 44/76-A	44.332	94.976	0.421
pilC	Vibrio cholerae strain A1552	42.424	94.737	0.402
pilC	Vibrio campbellii strain DS40M4	39.394	94.737	0.373