Detailed information NTG1040028

Bioinformatically predicted

Overview

• Name: pilE
• Type: Machinery gene
• Locus tag: ACDH69_RS15715
• Genome accession: NZ_CP167866
• Coordinates: 3654056..3654463 (-)
• Length: 135 a.a.
• NCBI ID: WP_372359091.1
• Uniprot ID: -
• Organism: Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:581
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3646192..3656075	3654056..3654463	within	0

Gene organization within MGE regions

Location: 3646192..3656075

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDH69_RS15690 (ACDH69_15690)	pilB	3647142..3648878 (-)	1737	WP_338339702.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACDH69_RS15695 (ACDH69_15695)	galE	3648995..3649972 (-)	978	WP_372359089.1	UDP-glucose 4-epimerase GalE	-
ACDH69_RS15700 (ACDH69_15700)	-	3650061..3651605 (-)	1545	WP_372359090.1	NAD(P)/FAD-dependent oxidoreductase	-
ACDH69_RS15705 (ACDH69_15705)	-	3651598..3652068 (-)	471	WP_228317397.1	GtrA family protein	-
ACDH69_RS15710 (ACDH69_15710)	-	3652071..3653972 (-)	1902	WP_230430545.1	hypothetical protein	-
ACDH69_RS15715 (ACDH69_15715)	pilE	3654056..3654463 (-)	408	WP_372359091.1	pilin	Machinery gene
ACDH69_RS15720 (ACDH69_15720)	pilC	3654816..3656075 (+)	1260	WP_228317394.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 135 a.a.
• Molecular weight: 13996.00 Da
• Isoelectric Point: 9.0168

>NTDB_id=1040028 ACDH69_RS15715 WP_372359091.1 3654056..3654463(-) (pilE) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:581]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYLVKSRVSEVVLAASSARTTVSEAAASDTATTMPASAAIETQSSKYVS
GVTYSNGVITATAKDLGGSTPTGTITLTGTKTANGQVNWVCSGTIDRKYRPSTCQ

Nucleotide

• Length: 408 bp

>NTDB_id=1040028 ACDH69_RS15715 WP_372359091.1 3654056..3654463(-) (pilE) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:581]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTTGTCGCGATCATTGCCATTCTGGCGGCCATTGCTCT
GCCCGCTTACCAAGATTATCTGGTCAAGTCACGCGTGTCGGAAGTGGTGCTAGCTGCTTCGTCGGCCCGTACCACTGTTT
CTGAAGCCGCTGCTTCGGATACTGCGACAACCATGCCGGCGAGCGCGGCCATTGAGACCCAGTCGTCCAAATATGTGTCG
GGCGTCACCTACTCCAACGGCGTGATCACCGCAACTGCCAAGGATCTGGGCGGTAGCACCCCCACAGGAACGATCACCCT
CACAGGCACCAAGACCGCTAACGGTCAGGTCAATTGGGTTTGCAGCGGCACGATTGATCGGAAGTACCGCCCGTCTACCT
GCCAGTAA

Domains

Predicted by InterproScan.

• Pilin (bacterial filament) (Pilin) (35-135)

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	36.957	100	0.504
pilA2	Legionella pneumophila str. Paris	48.201	100	0.496
pilA2	Legionella pneumophila strain ERS1305867	48.201	100	0.496
comP	Acinetobacter baylyi ADP1	43.333	100	0.481
pilA/pilAI	Pseudomonas stutzeri DSM 10701	43.478	100	0.444
pilA	Ralstonia pseudosolanacearum GMI1000	36.42	100	0.437
pilE	Neisseria gonorrhoeae strain FA1090	37.013	100	0.422
pilE	Neisseria gonorrhoeae MS11	36.538	100	0.422
pilA/pilA1	Eikenella corrodens VA1	36.601	100	0.415
pilA	Pseudomonas aeruginosa PAK	34.667	100	0.385
pilA	Acinetobacter baumannii strain A118	36.879	100	0.385
pilA/pilAII	Pseudomonas stutzeri DSM 10701	37.5	100	0.378
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	32.258	100	0.37
pilA	Vibrio cholerae C6706	32.258	100	0.37
pilA	Vibrio cholerae strain A1552	32.258	100	0.37
pilA	Vibrio parahaemolyticus RIMD 2210633	36.029	100	0.363