Detailed information NTG1040029

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACDH69_RS15720
• Genome accession: NZ_CP167866
• Coordinates: 3654816..3656075 (+)
• Length: 419 a.a.
• NCBI ID: WP_228317394.1
• Uniprot ID: -
• Organism: Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:581
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3646192..3656075	3654816..3656075	within	0

Gene organization within MGE regions

Location: 3646192..3656075

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDH69_RS15690 (ACDH69_15690)	pilB	3647142..3648878 (-)	1737	WP_338339702.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACDH69_RS15695 (ACDH69_15695)	galE	3648995..3649972 (-)	978	WP_372359089.1	UDP-glucose 4-epimerase GalE	-
ACDH69_RS15700 (ACDH69_15700)	-	3650061..3651605 (-)	1545	WP_372359090.1	NAD(P)/FAD-dependent oxidoreductase	-
ACDH69_RS15705 (ACDH69_15705)	-	3651598..3652068 (-)	471	WP_228317397.1	GtrA family protein	-
ACDH69_RS15710 (ACDH69_15710)	-	3652071..3653972 (-)	1902	WP_230430545.1	hypothetical protein	-
ACDH69_RS15715 (ACDH69_15715)	pilE	3654056..3654463 (-)	408	WP_372359091.1	pilin	Machinery gene
ACDH69_RS15720 (ACDH69_15720)	pilC	3654816..3656075 (+)	1260	WP_228317394.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46011.48 Da
• Isoelectric Point: 10.2875

>NTDB_id=1040029 ACDH69_RS15720 WP_228317394.1 3654816..3656075(+) (pilC) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:581]
MSVARSAIKKQSVDRNTSMLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITPKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMIGQIRTDIEGGSSLYESISKHPVHFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLVVAVGSIVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVADYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=1040029 ACDH69_RS15720 WP_228317394.1 3654816..3656075(+) (pilC) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:581]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAATCGGTCGACCGGAACACAAGCATGCTGCAGACCTTCGTTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGTAACGCCAATATGTTGCGAGCAGAGCTGCGCCGCC
AGGGCATTGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGCGGCGGGTAAAAAAATTACCCCAAAAGAC
ATCGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCTCTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGATCGGCCAGATCAGGACAGACATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCATTTTGACGAACTCTACCGCAACCTTGTCCGCGCGGGTGAAGGCGCTGGCGTACTGGAG
ACAGTGCTCGACACGGTCGCTACCTACAAAGAAAACATTGAAGCCCTCAAAGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCCGTGGCAATCATCGTGAGTGCGATTCTACTCATCTTCGTGGTGCCTCAGTTCGAAGAAGTATTTA
AGAACTTTGGCGCCGAATTACCGGCATTCACTCAGCTCCTCGTCAACGCCTCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGTTAGTGGTGGCGGTTGGATCCATCGTCGGCTTCATTTTTGCCTATAAGCGCTCTCCACGCATGCAGCATGGGCTCGA
TCGATTGATCCTCAAGGTGCCGGTAATTGGACAGATCATGCACAACAGTGCGATTGCACGTTTTGCACGGACGACTGCAG
TGACATTCAAGGCAGGCGTCCCACTAGTGGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAACAAGGTGTACGAGGAG
GCCGTTCTCAGGATGCGGGACGATGTGTCTGTCGGCTACCCGGTCAACATGGCGATGAAACAAGTGAATCTGTTTCCGCA
CATGGTGGTACAAATGACGGCGATCGGCGAAGAAGCAGGCGCCCTGGATACCATGCTTTTCAAGGTGGCAGACTACTTCG
AGCAGGAAGTCAACAACGCCGTGGACGCGCTAAGCAGCCTACTGGAGCCGCTGATCATGGTGTTCATCGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	53.202	96.897	0.516
pilC	Pseudomonas stutzeri DSM 10701	54.545	94.511	0.516
pilC	Acinetobacter baylyi ADP1	51.111	96.659	0.494
pilC	Acinetobacter baumannii D1279779	50.617	96.659	0.489
pilG	Neisseria gonorrhoeae MS11	43.609	95.227	0.415
pilG	Neisseria meningitidis 44/76-A	43	95.465	0.411
pilC	Vibrio cholerae strain A1552	40.75	95.465	0.389
pilC	Vibrio campbellii strain DS40M4	39	95.465	0.372
pilC	Thermus thermophilus HB27	38.693	94.988	0.368