Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ABRP16_RS09385 Genome accession   NZ_CP167825
Coordinates   2102334..2103371 (+) Length   345 a.a.
NCBI ID   WP_042613426.1    Uniprot ID   A0A8X8K2X7
Organism   Stenotrophomonas lacuserhaii strain WHRI 8086     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2097334..2108371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP16_RS09360 (ABRP16_009360) soxR 2098586..2099020 (+) 435 WP_349999059.1 redox-sensitive transcriptional activator SoxR -
  ABRP16_RS09365 (ABRP16_009365) - 2099058..2099660 (-) 603 WP_349999060.1 short chain dehydrogenase -
  ABRP16_RS09370 (ABRP16_009370) - 2099755..2100699 (+) 945 WP_349999061.1 LysR family transcriptional regulator -
  ABRP16_RS09375 (ABRP16_009375) proC 2100729..2101550 (-) 822 WP_349999062.1 pyrroline-5-carboxylate reductase -
  ABRP16_RS09380 (ABRP16_009380) - 2101569..2102246 (-) 678 WP_372487380.1 YggS family pyridoxal phosphate-dependent enzyme -
  ABRP16_RS09385 (ABRP16_009385) pilT 2102334..2103371 (+) 1038 WP_042613426.1 type IV pilus twitching motility protein PilT Machinery gene
  ABRP16_RS09390 (ABRP16_009390) pilU 2103459..2104604 (+) 1146 WP_080335115.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ABRP16_RS09395 (ABRP16_009395) - 2104687..2104857 (+) 171 Protein_1834 cupin domain-containing protein -
  ABRP16_RS09400 (ABRP16_009400) pilR 2104913..2106292 (-) 1380 WP_101098801.1 sigma-54 dependent transcriptional regulator Regulator
  ABRP16_RS09405 (ABRP16_009405) - 2106353..2107969 (-) 1617 WP_182656891.1 ATP-binding protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38604.36 Da        Isoelectric Point: 6.7271

>NTDB_id=1039621 ABRP16_RS09385 WP_042613426.1 2102334..2103371(+) (pilT) [Stenotrophomonas lacuserhaii strain WHRI 8086]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLACPPLFREVIQQPQGLILVTGPTGSGKSTTLAAMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQHGMMTLDQHL
QDLVKRSLITRNQAKEYAKDKRLFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1039621 ABRP16_RS09385 WP_042613426.1 2102334..2103371(+) (pilT) [Stenotrophomonas lacuserhaii strain WHRI 8086]
ATGGATATCGCCGAGCTGTTGGCGTTTTCCGTAAAAAACAAAGCATCCGACCTGCACCTGTCCGCAGGCCTGCCGCCGAT
GATCCGCGTGGATGGTGACGTCCGCCGCATCAACATCCCGGCGCTGGACCACAAACAGGTGCATGCGCTTGTCTACGACA
TCATGTCGGACAAGCAGCGTCGCGATTACGAAGAGTTCCTCGAGGTCGATTTCTCGTTCGAGATCCCGTCGCTCGCGCGC
TTCCGTGTCAATGCCTTCAACCAGAACCGCGGCGCCGGTGCGGTGTTCCGTACCATTCCCTCCGAAGTGCTGACGCTGGA
GGACCTGGCCTGCCCGCCGCTGTTCCGCGAGGTGATCCAGCAGCCGCAGGGCCTGATCCTGGTGACCGGCCCGACCGGTT
CCGGCAAGTCGACCACGCTGGCGGCGATGATCGATTACATCAACAAGAACGAGTACGGGCACATCCTCACCGTCGAGGAC
CCGATCGAGTTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGTGAAGTGCACCGTGACACGCACGGCTTCAACGA
AGCGCTGCGTTCGGCCCTGCGTGAAGATCCGGACATCATCCTGGTCGGCGAACTTCGCGATCTTGAAACCATCCGCCTGG
CCCTGACCGCGGCGGAAACCGGCCACCTGGTGTTCGGCACGCTGCACACCAGTTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCTGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCCGAGTCGCTGCGCGCGGTGATCTCGCAGGC
CCTGTTGAAGAAAGTGGGCGGCGGTCGTACCGCGGCCTGGGAAATCATGGTCGGCACCCCGGCCATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCGGCCATCCAGACCGGCCAGCAGCACGGCATGATGACCCTGGACCAGCACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACGCGCAACCAGGCCAAAGAGTACGCCAAGGACAAGCGCCTGTTCGAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

79.651

99.71

0.794
  pilT Acinetobacter baumannii strain A118

79.651

99.71

0.794
  pilT Acinetobacter nosocomialis M2

79.651

99.71

0.794
  pilT Pseudomonas stutzeri DSM 10701

78.779

99.71

0.786
  pilT Acinetobacter baylyi ADP1

77.907

99.71

0.777
  pilT Pseudomonas aeruginosa PAK

78.761

98.261

0.774
  pilT Legionella pneumophila strain Lp02

75

99.71

0.748
  pilT Legionella pneumophila strain ERS1305867

75

99.71

0.748
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.396

98.841

0.646
  pilT Neisseria gonorrhoeae MS11

65.103

98.841

0.643
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.565

100

0.496
  pilU Vibrio cholerae strain A1552

39.943

100

0.403
  pilU Pseudomonas stutzeri DSM 10701

40.413

98.261

0.397
  pilU Acinetobacter baylyi ADP1

39.706

98.551

0.391

Multiple sequence alignment