Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   ABRP16_RS09390 Genome accession   NZ_CP167825
Coordinates   2103459..2104604 (+) Length   381 a.a.
NCBI ID   WP_080335115.1    Uniprot ID   -
Organism   Stenotrophomonas lacuserhaii strain WHRI 8086     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2098459..2109604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP16_RS09360 (ABRP16_009360) soxR 2098586..2099020 (+) 435 WP_349999059.1 redox-sensitive transcriptional activator SoxR -
  ABRP16_RS09365 (ABRP16_009365) - 2099058..2099660 (-) 603 WP_349999060.1 short chain dehydrogenase -
  ABRP16_RS09370 (ABRP16_009370) - 2099755..2100699 (+) 945 WP_349999061.1 LysR family transcriptional regulator -
  ABRP16_RS09375 (ABRP16_009375) proC 2100729..2101550 (-) 822 WP_349999062.1 pyrroline-5-carboxylate reductase -
  ABRP16_RS09380 (ABRP16_009380) - 2101569..2102246 (-) 678 WP_372487380.1 YggS family pyridoxal phosphate-dependent enzyme -
  ABRP16_RS09385 (ABRP16_009385) pilT 2102334..2103371 (+) 1038 WP_042613426.1 type IV pilus twitching motility protein PilT Machinery gene
  ABRP16_RS09390 (ABRP16_009390) pilU 2103459..2104604 (+) 1146 WP_080335115.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ABRP16_RS09395 (ABRP16_009395) - 2104687..2104857 (+) 171 Protein_1834 cupin domain-containing protein -
  ABRP16_RS09400 (ABRP16_009400) pilR 2104913..2106292 (-) 1380 WP_101098801.1 sigma-54 dependent transcriptional regulator Regulator
  ABRP16_RS09405 (ABRP16_009405) - 2106353..2107969 (-) 1617 WP_182656891.1 ATP-binding protein -
  ABRP16_RS09410 (ABRP16_009410) sucC 2108266..2109435 (+) 1170 WP_057506903.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 42432.77 Da        Isoelectric Point: 6.8287

>NTDB_id=1039622 ABRP16_RS09390 WP_080335115.1 2103459..2104604(+) (pilU) [Stenotrophomonas lacuserhaii strain WHRI 8086]
MNSAATNTIDFTSFLKLMAHQRASDLFITAGMPPAIKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKTHECNFA
IGLSGVGRFRVSCFYQRNQVGMVLRRIETRIPTVDELALPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGYRNHNST
GHIITIEDPIEFVHRHEGCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANN
ANQAMDRIINFFPEDRRNQLLMDLSLNIKGVVAQQLIPSPDGRSRKVAMEIMLGTPLVQDYIREGEIHKLKEVMKESTQL
GMKTFDQSLFELYQAGEISYEDALRYADSQNEVRLKIKLSQGGDARTLAQGLDGVEISEVR

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=1039622 ABRP16_RS09390 WP_080335115.1 2103459..2104604(+) (pilU) [Stenotrophomonas lacuserhaii strain WHRI 8086]
GTGAACAGTGCCGCCACCAATACCATCGATTTCACTTCCTTCCTCAAGCTGATGGCGCACCAGCGCGCCTCGGACCTGTT
CATCACCGCAGGCATGCCGCCGGCGATCAAGGTCAACGGCAAGATCTCGCCGATCACCCAGACCCCGCTGACGCCGCAGC
AGAGCCGCGACCTGGTGCTGAACGTGATGACGCCGGCACAGCGCGAGGAATTCGAAAAGACCCACGAGTGCAACTTCGCC
ATCGGCCTGTCCGGTGTCGGTCGCTTCCGTGTCAGCTGCTTCTACCAGCGCAACCAGGTCGGGATGGTGCTGCGCCGGAT
CGAAACGCGCATCCCCACCGTGGATGAGCTGGCGCTGCCGCCGATCATCAAGACGCTGGCGATGACCAAGCGCGGCATCA
TCCTGTTCGTCGGCGCTACCGGCACCGGCAAGTCGACTTCGCTTGCGGCGATGATCGGCTACCGCAACCACAATTCGACC
GGGCACATCATCACCATCGAGGATCCGATCGAGTTCGTGCACCGCCATGAGGGCTGCATCATCACCCAGCGTGAAGTCGG
CATCGATACCGACAGCTGGGAAGCGGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGC
GTACCCGCGAAGGCATGGACCATGCCATCGCCTTCGCCGAAACCGGCCACCTGGTGCTGTGCACGCTGCATGCGAACAAC
GCCAACCAGGCGATGGACCGCATCATCAACTTCTTCCCGGAAGACCGGCGCAACCAGCTGCTGATGGATCTGTCGCTGAA
CATCAAGGGCGTGGTCGCGCAGCAGCTGATCCCTTCGCCCGATGGCCGTTCGCGCAAGGTGGCGATGGAGATCATGCTGG
GCACTCCGCTGGTGCAGGATTACATCCGCGAAGGTGAGATCCACAAGCTGAAGGAAGTGATGAAGGAGTCCACCCAGCTG
GGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTGTACCAGGCGGGCGAGATCAGCTACGAGGACGCGCTGCGCTATGC
GGATTCGCAGAACGAAGTGCGCCTGAAGATCAAGCTGAGCCAGGGCGGCGACGCCCGCACGCTGGCGCAGGGCCTGGACG
GGGTGGAGATCTCCGAAGTCCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(122-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

66.757

96.325

0.643
  pilU Acinetobacter baylyi ADP1

64.124

92.913

0.596
  pilU Vibrio cholerae strain A1552

52.247

93.438

0.488
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.458

93.963

0.399
  pilT Acinetobacter nosocomialis M2

40.116

90.289

0.362
  pilT Acinetobacter baumannii D1279779

40.116

90.289

0.362
  pilT Acinetobacter baumannii strain A118

40.116

90.289

0.362

Multiple sequence alignment