Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABRP16_RS09400 Genome accession   NZ_CP167825
Coordinates   2104913..2106292 (-) Length   459 a.a.
NCBI ID   WP_101098801.1    Uniprot ID   -
Organism   Stenotrophomonas lacuserhaii strain WHRI 8086     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2099913..2111292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP16_RS09375 (ABRP16_009375) proC 2100729..2101550 (-) 822 WP_349999062.1 pyrroline-5-carboxylate reductase -
  ABRP16_RS09380 (ABRP16_009380) - 2101569..2102246 (-) 678 WP_372487380.1 YggS family pyridoxal phosphate-dependent enzyme -
  ABRP16_RS09385 (ABRP16_009385) pilT 2102334..2103371 (+) 1038 WP_042613426.1 type IV pilus twitching motility protein PilT Machinery gene
  ABRP16_RS09390 (ABRP16_009390) pilU 2103459..2104604 (+) 1146 WP_080335115.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ABRP16_RS09395 (ABRP16_009395) - 2104687..2104857 (+) 171 Protein_1834 cupin domain-containing protein -
  ABRP16_RS09400 (ABRP16_009400) pilR 2104913..2106292 (-) 1380 WP_101098801.1 sigma-54 dependent transcriptional regulator Regulator
  ABRP16_RS09405 (ABRP16_009405) - 2106353..2107969 (-) 1617 WP_182656891.1 ATP-binding protein -
  ABRP16_RS09410 (ABRP16_009410) sucC 2108266..2109435 (+) 1170 WP_057506903.1 ADP-forming succinate--CoA ligase subunit beta -
  ABRP16_RS09415 (ABRP16_009415) sucD 2109457..2110332 (+) 876 WP_042613433.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49582.94 Da        Isoelectric Point: 6.1998

>NTDB_id=1039623 ABRP16_RS09400 WP_101098801.1 2104913..2106292(-) (pilR) [Stenotrophomonas lacuserhaii strain WHRI 8086]
MNETRSALVVDDERDIRELLVLTLGRMGLRINTAANLAEARELLASNPYDLCITDMRLPDGNGIELVTEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERPPAAAPAEQQGRLLGGSPAMDTLRSTLGKVARS
QAPVYILGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPSELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGASAEIAVDVRILSATHKDLSELVDEGRFRHDLYYRINVIELRVPPLRERHEDLPE
LAAAILARLARTHGCAVPLLAPSALEALAVYGFPGNVRELENILERALALAEGDSIGAADLRLPQPNGRNGGSNAAPPVE
AVVDLPAGSAALPSYIEQMERTAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1039623 ABRP16_RS09400 WP_101098801.1 2104913..2106292(-) (pilR) [Stenotrophomonas lacuserhaii strain WHRI 8086]
ATGAACGAAACCCGTAGCGCACTGGTCGTCGATGACGAGCGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCCGGAT
GGGCCTGCGTATCAACACCGCCGCCAATCTCGCCGAAGCACGCGAGCTGCTGGCCAGCAATCCGTACGATCTCTGCATCA
CCGATATGCGGCTGCCCGATGGCAACGGCATCGAACTGGTCACCGAGATCGCCCAGCACTACCCACGCACGCCGGTAGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGCGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCCGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACACCGAACGGCCACCCGCGGCCGCCCCGG
CCGAACAGCAGGGACGCCTGCTCGGCGGCTCACCGGCGATGGATACCCTGCGCAGCACGCTGGGCAAGGTCGCGCGCAGC
CAGGCACCGGTGTACATCCTTGGCGAATCGGGGGTCGGCAAGGAACTGGTCGCGCGCACCATCCACGAGCAGGGCGCGCG
CGCGGCGGGCCCGTTCATTCCGGTCAACTGCGGTGCCATTCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGA
AGGGCAGCTTCACCGGCGCCCACGCCGACAAACCCGGCCTGTTCCAGGCAGCACACGGCGGCACCCTGTTCCTGGACGAG
GTGGCCGAACTGCCGCTGCAGATGCAGGTCAAACTGCTGCGCGCCATCCAGGAAAAATCAGTCCGGCCGGTCGGTGCTTC
GGCGGAAATCGCAGTGGACGTGCGGATCCTGTCGGCCACCCACAAGGACTTGTCCGAGCTGGTGGACGAAGGCCGCTTCC
GGCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTTCCGCCGCTGCGCGAGCGCCATGAAGACCTGCCCGAA
CTGGCTGCTGCGATCCTGGCACGGCTGGCACGCACCCACGGCTGCGCCGTGCCGCTGCTGGCGCCGTCGGCACTGGAAGC
GCTCGCTGTGTACGGCTTCCCCGGCAACGTGCGCGAACTTGAAAACATCCTGGAGCGGGCACTGGCGTTGGCCGAGGGAG
ACAGCATCGGCGCGGCTGACCTGCGCCTGCCGCAGCCCAATGGCCGCAACGGTGGCAGCAACGCCGCACCGCCGGTGGAA
GCGGTCGTCGACCTGCCGGCAGGCAGTGCCGCCCTGCCCTCCTACATCGAACAGATGGAGCGCACCGCCATCCAGCGCGC
GCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTTGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGA
AGAAACTCGGCATGGAATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(416-456)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.939

99.346

0.625
  pilR Acinetobacter baumannii strain A118

48.913

100

0.49

Multiple sequence alignment