Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   DQM54_RS10695 Genome accession   NZ_LS483375
Coordinates   2136810..2137292 (-) Length   160 a.a.
NCBI ID   WP_045772576.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2131810..2142292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS10695 (NCTC3165_02130) comR/comR2 2136810..2137292 (-) 483 WP_045772576.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQM54_RS10710 (NCTC3165_02133) ftsH 2137821..2139803 (-) 1983 WP_046164766.1 ATP-dependent zinc metalloprotease FtsH -
  DQM54_RS10715 (NCTC3165_02134) hpt 2139822..2140364 (-) 543 WP_111724263.1 hypoxanthine phosphoribosyltransferase -
  DQM54_RS10720 (NCTC3165_02135) tilS 2140369..2141646 (-) 1278 WP_111724264.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 19931.87 Da        Isoelectric Point: 9.4703

>NTDB_id=1021346 DQM54_RS10695 WP_045772576.1 2136810..2137292(-) (comR/comR2) [Streptococcus gordonii strain NCTC3165]
MKFEDVYKQVEGIVKRCYKDYYLHLWEYADWRQEGMLVLYELLKSHPNLLEDHPRLYRYFKTKFRNRIHDLIRRQESQKR
KLDRQPYEEVSEIGHRLRMKELYLDELVAFRSAMAEYRSQLSPEESKQYERLMADERFKGRKAMLKDLSYHLRDFNPRLD

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1021346 DQM54_RS10695 WP_045772576.1 2136810..2137292(-) (comR/comR2) [Streptococcus gordonii strain NCTC3165]
ATGAAGTTTGAGGACGTATACAAACAAGTTGAAGGGATAGTCAAGCGCTGTTATAAAGATTATTATCTGCACTTATGGGA
GTATGCAGATTGGAGGCAGGAAGGAATGTTGGTGTTGTACGAATTATTAAAAAGTCATCCCAACCTACTGGAAGATCATC
CACGCCTGTACCGTTACTTCAAGACCAAGTTTCGGAACAGAATTCATGATTTGATTCGTCGCCAAGAGAGTCAAAAGCGG
AAATTGGACAGGCAACCCTATGAAGAGGTCAGCGAGATAGGTCATCGTTTAAGAATGAAAGAGCTGTATCTGGATGAATT
GGTAGCTTTTAGAAGTGCAATGGCAGAGTATAGAAGTCAGCTCAGTCCAGAAGAATCAAAACAATATGAGCGCCTGATGG
CAGATGAAAGATTCAAAGGACGTAAGGCAATGCTCAAAGATTTGTCCTATCACTTAAGGGATTTCAATCCCCGTTTAGAT
TAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

97.5

100

0.975
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

97.5

100

0.975
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

50

97.5

0.488
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

49.359

97.5

0.481
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

49.359

97.5

0.481
  comX/comX1 Streptococcus pneumoniae Rx1

48.718

97.5

0.475
  comX/comX2 Streptococcus pneumoniae D39

48.718

97.5

0.475
  comX/comX1 Streptococcus pneumoniae D39

48.718

97.5

0.475
  comX/comX2 Streptococcus pneumoniae R6

48.718

97.5

0.475
  comX/comX1 Streptococcus pneumoniae R6

48.718

97.5

0.475
  comX/comX1 Streptococcus pneumoniae TIGR4

48.718

97.5

0.475
  comX/comX2 Streptococcus pneumoniae Rx1

48.718

97.5

0.475
  comX/comX2 Streptococcus pneumoniae TIGR4

48.718

97.5

0.475
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

48.077

97.5

0.469
  comX/sigX Streptococcus suis P1/7

48.387

96.875

0.469
  comX/sigX Streptococcus suis D9

48.387

96.875

0.469
  comX/sigX Streptococcus suis isolate S10

48.387

96.875

0.469
  comX/sigX Streptococcus mutans UA159

47.436

97.5

0.463
  comX Streptococcus thermophilus LMG 18311

43.871

96.875

0.425
  comX Streptococcus thermophilus LMD-9

43.871

96.875

0.425
  comX/sigX Streptococcus salivarius strain HSISS4

43.226

96.875

0.419
  comX Streptococcus salivarius SK126

43.226

96.875

0.419
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.208

96.25

0.406
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.208

96.25

0.406
  comX Streptococcus sobrinus strain NIDR 6715-7

42.208

96.25

0.406
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

40.506

98.75

0.4
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

41.558

96.25

0.4
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

41.558

96.25

0.4
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

41.558

96.25

0.4
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

41.558

96.25

0.4